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result(s) for
"Liao, Cheng-Hong"
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Deep learning algorithm evaluation of hypertension classification in less photoplethysmography signals conditions
by
Chang, Sheng-Nan
,
Yen, Chih-Ta
,
Liao, Cheng-Hong
in
Algorithms
,
Artificial neural networks
,
Data points
2021
This study used photoplethysmography signals to classify hypertensive into no hypertension, prehypertension, stage I hypertension, and stage II hypertension. There are four deep learning models are compared in the study. The difficulties in the study are how to find the optimal parameters such as kernel, kernel size, and layers in less photoplethysmographyt (PPG) training data condition. PPG signals were used to train deep residual network convolutional neural network (ResNetCNN) and bidirectional long short-term memory (BILSTM) to determine the optimal operating parameters when each dataset consisted of 2100 data points. During the experiment, the proportion of training and testing datasets was 8:2. The model demonstrated an optimal classification accuracy of 76% when the testing dataset was used.
Journal Article
Identification of Theileria spp. and investigation of hematological profiles of their infections in goats in Hainan Island, China
Theileria spp. are a group of parasites primarily transmitted by ticks and can pose a significant threat to domestic and wild animals globally. The main objective of this study was to understand the epidemiology of Theileria spp. in goats of Hainan Island/province, which is the only tropical region of China, and to study their hematological profiles in naturally infected goats. A total of 464 blood samples were collected from randomly selected local adult goats ( Capra hircus , local domestic breed with black hair), from six cities and eight counties of Hainan, from November 2017 to October 2020. Blood smear microscopy of the sample and a nested polymerase chain reaction (nPCR) targeting the 18S rRNA gene combined with DNA sequencing were used to detect piroplasm infections in goats. Data analysis of the obtained sequences revealed that all the sequences were highly similar to the Theileria luwenshuni 18S rRNA gene sequence from the database. This result is consistent with the microscopic examination. In the hematological test, hematocrit, mean corpuscular volume, and mean corpuscular hemoglobin of the goats naturally infected with T. luwenshuni significantly increased, while mean corpuscular hemoglobin concentration and red blood cell distribution width (RDW) were significantly decreased. Results showed that T. luwenshuni could cause macrocytic, hypochromic anemia in goats. This study provides reliable and comprehensive information about the epidemiology of the parasite infections and hematological profile of the infected goats in Hainan, which encourages further investigations to develop practical control strategies for Theileria spp. infections in tropical areas. Les Theileria spp. sont un groupe de parasites principalement transmis par les tiques qui peuvent constituer une menace importante pour les animaux domestiques et sauvages dans le monde. L’objectif principal de cette étude était de comprendre l’épidémiologie de Theileria spp. chez les chèvres de l’île/province de Hainan, qui est la seule région tropicale de Chine et étudier les profils hématologiques des chèvres naturellement infectées. 464 échantillons de sang ont été prélevés sur des chèvres adultes locales sélectionnées au hasard ( Capra hircus , race domestique locale à poils noirs), dans 6 villes et 8 comtés de Hainan, de novembre 2017 à octobre 2020. L’étude microscopique du frottis sanguin de l’échantillon et la réaction en chaîne par polymérase nichée (nPCR) ciblant le gène de l’ARNr 18S combinée au séquençage de l’ADN ont été utilisées pour détecter les infections à piroplasmes chez les chèvres. L’analyse des séquences obtenues a révélé que toutes les séquences étaient très similaires à la séquence du gène de l’ARNr 18S de T. luwenshuni de la base de données. Le résultat est cohérent avec l’examen microscopique. Dans le test hématologique, l’hématocrite, le volume corpusculaire moyen et l’hémoglobine corpusculaire moyenne des chèvres naturellement infectées par T. luwenshuni ont augmenté de manière significative, tandis que la concentration moyenne d’hémoglobine corpusculaire et la largeur de distribution des globules rouges (RDW) ont été significativement diminuées. Les résultats ont montré que T. luwenshuni pouvait provoquer une anémie macrocytaire et une anémie hypochrome chez les chèvres. Cette étude fournit des informations fiables et complètes sur l’épidémiologie des infections parasitaires et le profil hématologique des chèvres infectées à Hainan, ce qui encourage des investigations supplémentaires pour développer des stratégies pratiques de contrôle des infections par Theileria spp. dans les zones tropicales.
Journal Article
RNA interference-mediated knockdown of 3, 4-dihydroxyphenylacetaldehyde synthase affects larval development and adult survival in the mosquito Aedes aegypti
2019
Background
The cuticle is an indispensable structure that protects the mosquito against adverse environmental conditions and prevents pathogen entry. While most cuticles are hard and rigid, some parts of cuticle are soft and flexible to allow movement and blood-feeding. It has been reported that 3, 4-dihydroxyphenylacetaldehyde (DOPAL) synthase is associated with flexible cuticle formation in
Aedes aegypti
. However, the molecular function of
DOPAL synthase
in the ontogenesis of mosquito remains largely unknown. In this study, we characterized gene expression profiles of
DOPAL synthase
and investigated its functions in larvae and female adults of
Aedes agypti
by RNAi.
Results
Our results suggest that the expression of
DOPAL synthase
is different during development and the transcriptional level reached its peak at the female white pupal stage, and
DOPAL synthase
was more highly expressed in the cuticle and midgut than other tissues in the adult. The development process from larva to pupa was slowed down strikingly by feeding the first-instar larvae with chitosan/
DOPAL synthase
dsRNA nanoparticles. A qRT-PCR analysis confirmed that the dsRNA-mediated transcription of the
DOPAL synthase
was reduced > 50% in fourth-instar larvae. Meanwhile, larval molt was abnormal during development. Transmission electron microscopy results indicated that the formation of endocuticle and exocuticle was blocked. In addition, we detected that the ds
DOPAL synthase
RNA caused significant mortality when injected into the female adult mosquitoes.
Conclusions
Our findings demonstrate that
DOPAL synthase
plays a critical role in mosquito larval development and adult survival and suggest that
DOPAL synthase
could be a good candidate gene in RNAi intervention strategies in mosquito control.
Journal Article
Elongases of Long-Chain Fatty Acids ELO2 and ELO9 Are Involved in Cuticle Formation and Function in Fecundity in the Yellow Fever Mosquito, Aedes aegypti
2023
Long-chain fatty acid elongases (ELOs) play important roles in the metabolism of fatty acids in insects. In this study, the genes for two elongases from Aedes aegypti were identified, AeELO2 and AeELO9. Quantitative real time PCR showed that AeELO2 and AeELO9 are expressed at all developmental stages and some body parts, but with different expression patterns. RNAi-mediated knockdown of AeELO2 and AeELO9 was performed to investigate their roles in the development, growth, osmotic balance, and cold tolerance of Ae. aegypti. Knockdown of AeELO2 slowed larval growth and development by causing molting abnormalities. Additionally, 33% ± 3.3% of adults died during oviposition, accompanied by an abnormal extension of cuticles in AeELO2-dsRNA knockdown mosquitos. Knockdown of AeEL09 resulted in abnormal balance of cuticular osmotic pressure and a reduction in egg production. The maximal mRNAs of AeELO2 and AeELO9 were detected in eggs at 72 h after oviposition. Moreover, AeELO2 knockdown reduced the egg hatching rates and AeELO9 knockdown larvae did not develop well. In summary, AeELO2 is involved in larval molting and growth, and its knockdown affects the flexibility and elasticity of adult mosquito cuticles. AeELO9 regulates cold tolerance, osmotic balance, and egg development in Ae. aegypti.
Journal Article
Blood Pressure and Heart Rate Measurements Using Photoplethysmography with Modified LRCN
by
M. Mostafa, Samih
,
Ahmed Idris, Sahar
,
Kaur, Manjit
in
Algorithms
,
Artificial neural networks
,
Blood pressure
2022
In this study, single-channel photoplethysmography (PPG) signals were used to estimate the heart rate (HR), diastolic blood pressure (DBP), and systolic blood pressure (SBP). A deep learning model was proposed using a long-term recurrent convolutional network (LRCN) modified from a deep learning algorithm, the convolutional neural network model of the modified inception deep learning module, and a long short-term memory network (LSTM) to improve the model's accuracy of BP and HR measurements. The PPG data of 1,551 patients were obtained from the University of California Irvine Machine Learning Repository. How to design a filter of PPG signals and how to choose the loss functions for deep learning model were also discussed in the study. Finally, the stability of the proposed model was tested using a 10-fold cross-validation, with an MAE ± SD of 2.942 ± 5.076 mmHg for SBP, 1.747 ± 3.042 mmHg for DBP, and 1.137 ± 2.463 bpm for the HR. Compared with its existing counterparts, the model entailed less computational load and was more accurate in estimating SBP, DBP, and HR. These results established the validity of the model.
Journal Article
Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function
by
Zhang, Hui
,
Wang, Jin-kai
,
Niu, Ao-lei
in
Animal Systematics/Taxonomy/Biogeography
,
Animals
,
Biomedical and Life Sciences
2011
Background
Homeobox genes are the key regulators during development, and they are in general highly conserved with only a few reported cases of rapid evolution.
RHOXF2
is an X-linked homeobox gene in primates. It is highly expressed in the testicle and may play an important role in spermatogenesis. As male reproductive system is often the target of natural and/or sexual selection during evolution, in this study, we aim to dissect the pattern of molecular evolution of
RHOXF2
in primates and its potential functional consequence.
Results
We studied sequences and copy number variation of
RHOXF2
in humans and 16 nonhuman primate species as well as the expression patterns in human, chimpanzee, white-browed gibbon and rhesus macaque. The gene copy number analysis showed that there had been parallel gene duplications/losses in multiple primate lineages. Our evidence suggests that 11 nonhuman primate species have one
RHOXF2
copy, and two copies are present in humans and four Old World monkey species, and at least 6 copies in chimpanzees. Further analysis indicated that the gene duplications in primates had likely been mediated by endogenous retrovirus (ERV) sequences flanking the gene regions. In striking contrast to non-human primates, humans appear to have homogenized their two
RHOXF2
copies by the ERV-mediated non-allelic recombination mechanism. Coding sequence and phylogenetic analysis suggested multi-lineage strong positive selection on
RHOXF2
during primate evolution, especially during the origins of humans and chimpanzees. All the 8 coding region polymorphic sites in human populations are non-synonymous, implying on-going selection. Gene expression analysis demonstrated that besides the preferential expression in the reproductive system,
RHOXF2
is also expressed in the brain. The quantitative data suggests expression pattern divergence among primate species.
Conclusions
RHOXF2
is a fast-evolving homeobox gene in primates. The rapid evolution and copy number changes of
RHOXF2
had been driven by Darwinian positive selection acting on the male reproductive system and possibly also on the central nervous system, which sheds light on understanding the role of homeobox genes in adaptive evolution.
Journal Article
Accelerated Evolution of the Pituitary Adenylate Cyclase-Activating Polypeptide Precursor Gene During Human Origin
by
Lin, Alice A
,
Su, Bing
,
Zheng, Hong-Kun
in
Amino Acid Motifs
,
Amino Acid Sequence
,
Amino acids
2005
Pituitary adenylate cyclase-activating polypeptide (PACAP) is a neuropeptide abundantly expressed in the central nervous system and involved in regulating neurogenesis and neuronal signal transduction. The amino acid sequence of PACAP is extremely conserved across vertebrate species, indicating a strong functional constraint during the course of evolution. However, through comparative sequence analysis, we demonstrated that the PACAP precursor gene underwent an accelerated evolution in the human lineage since the divergence from chimpanzees, and the amino acid substitution rate in humans is at least seven times faster than that in other mammal species resulting from strong Darwinian positive selection. Eleven human-specific amino acid changes were identified in the PACAP precursors, which are conserved from murine to African apes. Protein structural analysis suggested that a putative novel neuropeptide might have originated during human evolution and functioned in the human brain. Our data suggested that the PACAP precursor gene underwent adaptive changes during human origin and may have contributed to the formation of human cognition.
Journal Article
Elongases of Long-Chain Fatty Acids ELO2 and ELO9 Are Involved in Cuticle Formation and Function in Fecundity in the Yellow Fever Mosquito, IAedes aegypti/I
by
Wu, Yu-Chen
,
Chen, Jiu-Kai
,
Han, Qian
in
Amino acids
,
Animal development
,
Biological research
2023
Elongases of long-chain fatty acids (ELOs) play an important role in the function and metabolism of fatty acids of different chain lengths. However, little is known about the expression and biological function of fatty acid ELOs in insects, including in the larvae and adult blood-feeding Ae. aegypti mosquitoes. Therefore, the study of ELOs is necessary to understand the development and reproduction of insects, including mosquitoes. In this study, two novel ELO genes were identified in Ae. aegypti. We used two different RNAi methods (larval-nanoparticle feeding; adult-microinjection) to analyze the functions of AeELO2 and AeELO9 in larvae development and adult fecundity in Aedes aegypti. The results indicated that AeELO2 and AeELO9 play crucial roles in larval development and the adult fecundity of Ae. aegypti. AeELO2 mainly participated in larval molting behavior and growth, and it regulated the flexibility and elasticity of adult mosquito cuticles. AeELO9 affected the cold resistance of larvae and adult mosquitoes. It also regulated the permeability of larvae and adult mosquito cuticles and egg development, therefore affecting the reproductive ability of Ae. aegypti. Long-chain fatty acid elongases (ELOs) play important roles in the metabolism of fatty acids in insects. In this study, the genes for two elongases from Aedes aegypti were identified, AeELO2 and AeELO9. Quantitative real time PCR showed that AeELO2 and AeELO9 are expressed at all developmental stages and some body parts, but with different expression patterns. RNAi-mediated knockdown of AeELO2 and AeELO9 was performed to investigate their roles in the development, growth, osmotic balance, and cold tolerance of Ae. aegypti. Knockdown of AeELO2 slowed larval growth and development by causing molting abnormalities. Additionally, 33% ± 3.3% of adults died during oviposition, accompanied by an abnormal extension of cuticles in AeELO2-dsRNA knockdown mosquitos. Knockdown of AeEL09 resulted in abnormal balance of cuticular osmotic pressure and a reduction in egg production. The maximal mRNAs of AeELO2 and AeELO9 were detected in eggs at 72 h after oviposition. Moreover, AeELO2 knockdown reduced the egg hatching rates and AeELO9 knockdown larvae did not develop well. In summary, AeELO2 is involved in larval molting and growth, and its knockdown affects the flexibility and elasticity of adult mosquito cuticles. AeELO9 regulates cold tolerance, osmotic balance, and egg development in Ae. aegypti.
Journal Article
Hydrogen Sulfide Inhibits Transforming Growth Factor Beta-1 Induced Bronchial Epithelial-mesenchymal Transition
by
Cheng-Cheng Liao Ya-Hong Chen Fan Lin Yong-Fen Qi
in
Airway management
,
Antibiotics
,
Biotechnology
2015
INTRODUCTION
Chronic obstructive pulmonary disease (COPD) is one of the leading causes of death in the developed world and associated with a high individual and socioeconomic burden. It is characterized by persistent airflow limitation that is usually progressive and associated with an enhanced chronic inflammatory response in the airways and the lung to noxious panicles or gases. Peri-bronchiolar fibrosis was occurred in small airways in the early state of COPD, and then followed by structure changes, and finally became persistent airflow limitation?21 Recent researches have shown that epithelial-mesenchymal transition (EMT) is one of the leading causes of fibrosis in various diseases.
Journal Article
Highly efficient luminescence from space-confined charge-transfer emitters
by
Liao, Liang-Sheng
,
Qu, Yang-Kun
,
Auras, Florian
in
639/624/1020/1091
,
639/638/298/917
,
Biomaterials
2020
Charge-transfer (CT) complexes, formed by electron transfer from a donor to an acceptor, play a crucial role in organic semiconductors. Excited-state CT complexes, termed exciplexes, harness both singlet and triplet excitons for light emission, and are thus useful for organic light-emitting diodes (OLEDs). However, present exciplex emitters often suffer from low photoluminescence quantum efficiencies (PLQEs), due to limited control over the relative orientation, electronic coupling and non-radiative recombination channels of the donor and acceptor subunits. Here, we use a rigid linker to control the spacing and relative orientation of the donor and acceptor subunits, as demonstrated with a series of intramolecular exciplex emitters based on 10-phenyl-9,10-dihydroacridine and 2,4,6-triphenyl-1,3,5-triazine. Sky-blue OLEDs employing one of these emitters achieve an external quantum efficiency (EQE) of 27.4% at 67 cd m
−2
with only minor efficiency roll-off (EQE = 24.4%) at a higher luminous intensity of 1,000 cd m
−2
. As a control experiment, devices using chemically and structurally related but less rigid emitters reach substantially lower EQEs. These design rules are transferrable to other donor/acceptor combinations, which will allow further tuning of emission colour and other key optoelectronic properties.
The use of rigid linkers to control the relative position and interaction of donor and acceptor units in exciplex emitters leads to the realization of organic light-emitting devices with enhanced external quantum efficiency.
Journal Article