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result(s) for
"Liu, Yuanyuan"
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Cell Death from Antibiotics Without the Involvement of Reactive Oxygen Species
by
Imlay, James A.
,
Liu, Yuanyuan
in
aminoglycoside antibiotics
,
Ampicillin - pharmacology
,
Anti-Bacterial Agents - pharmacology
2013
Recent observations have suggested that classic antibiotics kill bacteria by stimulating the formation of reactive oxygen species (ROS). If true, this notion might guide new strategies to improve antibiotic efficacy. In this study, the model was directly tested. Contrary to the hypothesis, antibiotic treatment did not accelerate the formation of hydrogen peroxide in Escherichia coli and did not elevate intracellular free iron, an essential reactant for the production of lethal damage. Lethality persisted in the absence of oxygen, and DNA repair mutants were not hypersensitive, undermining the idea that toxicity arose from oxidative DNA lesions. We conclude that these antibiotic exposures did not produce ROS and that lethality more likely resulted from the direct inhibition of cell-wall assembly, protein synthesis, and DNA replication.
Journal Article
Prevalence, distribution, and associated factors of suicide attempts in young adolescents: School-based data from 40 low-income and middle-income countries
2018
Suicide attempts are the most important known predictor of death by suicide. The aim of this study is to examine the prevalence, distribution, and associated factors of suicide attempts among young adolescents in 40 low-income and middle-income countries. We used data from the Global School-Based Student Health Survey (2009-2013) and a nationally representative study in China (2010), which are school-based surveys of students primarily aged 12-18 years that assess health behaviors using an anonymous, standardized, self-reported questionnaire. We calculated the prevalence of suicide attempts in young adolescents from 40 low-income and middle-income countries using the surveys. Multilevel logistic models were used to estimate the associations between suicide attempts and potential risk factors, adjusting for gender, age, school and survey year. Results show that the mean 12-month prevalence of suicide attempts was 17.2%, ranging from 6.7% in Malaysia to 61.2% in Samoa. The overall prevalence of suicide attempts was higher for girls than for boys (18.2% vs 16.2%, P<0.05). Among the suicide attempts, the proportion of suicide attempts with a plan was higher for girls than for boys (62.7% vs 53.2%, P<0.05). Both the prevalence of suicide attempts and the proportion of suicide attempts with a plan increased with age. Factors associated with suicide attempts included poor socioeconomic status, history of bullying, loneliness and anxiety, tobacco and alcohol use, and weak family and social relationships. In conclusion, suicide attempts are frequent among young adolescents in low-income and middle-income countries. Girls and older adolescents tend to make suicide attempts with a plan. The data demonstrate the need to strengthen suicide intervention and prevention programs for young adolescents in low-income and middle-income countries.
Journal Article
Long noncoding RNA GAS5 inhibits progression of colorectal cancer by interacting with and triggering YAP phosphorylation and degradation and is negatively regulated by the m6A reader YTHDF3
by
Liu, Jingwen
,
Che, Liheng
,
Zhou, Aijun
in
Antisense RNA
,
Biochemistry
,
Biomedical and Life Sciences
2019
Background
YAP activation is crucial for cancer development including colorectal cancer (CRC). Nevertheless, it remains unclear whether N6-Methyladenosine (m
6
A) modified transcripts of long noncoding RNAs (lncRNAs) can regulate YAP activation in cancer progression. We investigated the functional link between lncRNAs and the m
6
A modification in YAP signaling and CRC progression.
Methods
YAP interacting lncRNAs were screened by RIP-sequencing, RNA FISH and immunofluorescence co-staining assays. Interaction between YAP and lncRNA GAS5 was studied by biochemical methods. MeRIP-sequencing combined with lncRNA-sequencing were used to identify the m
6
A modified targets of YTHDF3 in CRC. Gain-of-function and Loss-of-function analysis were performed to measure the function of GAS5-YAP-YTHDF3 axis in CRC progression in vitro and in vivo.
Results
GAS5 directly interacts with WW domain of YAP to facilitate translocation of endogenous YAP from the nucleus to the cytoplasm and promotes phosphorylation and subsequently ubiquitin-mediated degradation of YAP to inhibit CRC progression in vitro and in vivo. Notably, we demonstrate the m
6
A reader YTHDF3 not only a novel target of YAP but also a key player in YAP signaling by facilitating m
6
A-modified lncRNA GAS5 degradation, which profile a new insight into CRC progression. Clinically, lncRNA GAS5 expressions is negatively correlated with YAP and YTHDF3 protein levels in tumors from CRC patients.
Conclusions
Our study uncovers a negative functional loop of lncRNA GAS5-YAP-YTHDF3 axis, and identifies a new mechanism for m
6
A-induced decay of GAS5 on YAP signaling in progression of CRC which may offer a promising approach for CRC treatment.
Journal Article
Solar GHI Ensemble Prediction Based on a Meteorological Model and Method Kalman Filter
2022
The intensity of light emanating from sun is determined by using a meteorological version and is altered with the numerical version, and the forecast accuracy is improved in advance by using Kalman Filter. As the accuracy of the version output related to its specific position is often questionable, group prediction constituting three members is suggested and agreed upon measurement. Also, this ensemble prediction provides an estimation of the solar global horizontal irradiance uncertainty (i.e., coverage rate of the prediction interval), which can be useful to provide flexible energy production forecasts. This article displays how the method Kalman filter could be used as an error correction way to alter the predicted irradiance value. The Kalman filter ameliorates the prediction of solar global horizontal irradiance as well as its interval. As the empirical coverage rate increases and closes to the nominal coverage rate, the interval size reduces.
Journal Article
Ferroptosis and Its Potential Role in Human Diseases
2020
Ferroptosis is a novel regulated cell death pattern discovered when studying the mechanism of erastin-killing RAS mutant tumor cells in 2012. It is an iron-dependent programmed cell death pathway mainly caused by an increased redox imbalance but with distinct biological and morphology characteristics when compared to other known cell death patterns. Ferroptosis is associated with various diseases including acute kidney injury, cancer, and cardiovascular, neurodegenerative, and hepatic diseases. Moreover, activation or inhibition of ferroptosis using a variety of ferroptosis initiators and inhibitors can modulate disease progression in animal models. In this review, we provide a comprehensive analysis of the characteristics of ferroptosis, its initiators and inhibitors, and the potential role of its main metabolic pathways in the treatment and prevention of various diseased states. We end the review with the current knowledge gaps in this area to provide direction for future research on ferroptosis.
Journal Article
Research on Integration of Regional Red Culture into Ideological and Political Education Paths in Higher Vocational Colleges
2023
This paper takes regional red culture as an example and applies various research methods, including literature research, survey research, and teaching practice research, to examine the importance of integrating regional red culture into the ideological and political education curriculum in higher vocational colleges. By adopting strategies such as rational inheritance, emotional resonance, atmosphere creating, platform building, and autonomous researching and learning, the study analyzes how regional red culture can be effectively integrated into the ideological and political education in higher vocational colleges, with the ultimate goal of promoting cultural confidence and nurturing individuals with a strong sense of core socialist values.
Journal Article
The Exploration of Integrating the Midjourney Artificial Intelligence Generated Content Tool into Design Systems to Direct Designers towards Future-Oriented Innovation
2023
In an age where computing capabilities are expanding at a breathtaking pace, the advent of Artificial Intelligence-Generated Content (AIGC) technology presents unprecedented opportunities and challenges to the future of design. It is crucial for designers to investigate how to utilize this powerful tool to facilitate innovation effectively. As AIGC technology evolves, it will inevitably shift the expectations of designers, compelling them to delve deeper into the essence of design creativity, transcending traditional sketching or modeling skills. This study provides valuable insights for designers on leveraging AIGC for forward-thinking design innovation. We focus on the representative AIGC tool, “Midjourney”, to explore its integration into design systems for collaborative innovation among content creators. We introduce an AIGC-based Midjourney path for product design and present a supporting tool card set: AMP-Cards. To confirm their utility, we undertook extensive validation through advanced prototype design research, task-specific project practices, and interdisciplinary collaborative seminars. Our findings indicate that AIGC can considerably enhance designers’ efficiency during product development, especially in the “explorative product shape” phase. The technology excels in identifying design styles and quickly producing varied design solutions. Moreover, AIGC’s capacity to swiftly translate creators’ concepts into visual forms greatly aids in multidisciplinary team communication and innovation.
Journal Article
MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop
by
Du, Minmin
,
Deng, Lei
,
Li, Chuanyou
in
Arabidopsis - metabolism
,
Arabidopsis Proteins - metabolism
,
Basic Helix-Loop-Helix Leucine Zipper Transcription Factors - genetics
2019
In tomato (Solanum lycopersicum), as in other plants, the immunity hormone jasmonate (JA) triggers genome-wide transcriptional changes in response to pathogen and insect attack. These changes are largely regulated by the basic helix-loop-helix (bHLH) transcription factor MYC2. The function of MYC2 depends on its physical interaction with the MED25 subunit of the Mediator transcriptional coactivator complex. Although much has been learned about the MYC2-dependent transcriptional activation of JA-responsive genes, relatively less studied is the termination of JA-mediated transcriptional responses and the underlying mechanisms. Here, we report an unexpected function of MYC2 in regulating the termination of JA signaling through activating a small group of JA-inducible bHLH proteins, termed MYC2-TARGETED BHLH1 (MTB1), MTB2, and MTB3. MTB proteins negatively regulate JA-mediated transcriptional responses via their antagonistic effects on the functionality of the MYC2-MED25 transcriptional activation complex. MTB proteins impair the formation of the MYC2-MED25 complex and compete with MYC2 to bind to its target gene promoters. Therefore, MYC2 and MTB proteins form an autoregulatory negative feedback circuit to terminate JA signaling in a highly organized manner. We provide examples demonstrating that gene editing tools such as CRISPR/Cas9 open up new avenues to exploit MTB genes for crop protection.
Journal Article
Generation of perfect vortex and vector beams based on Pancharatnam-Berry phase elements
by
Zhou, Junxiao
,
Fan, Dianyuan
,
Wen, Shuangchun
in
639/624/1075
,
639/624/400/1021
,
639/624/400/1103
2017
Perfect vortex beams are the orbital angular momentum (OAM)-carrying beams with fixed annular intensities, which provide a better source of OAM than traditional Laguerre-Gaussian beams. However, ordinary schemes to obtain the perfect vortex beams are usually bulky and unstable. We demonstrate here a novel generation scheme by designing planar Pancharatnam-Berry (PB) phase elements to replace all the elements required. Different from the conventional approaches based on reflective or refractive elements, PB phase elements can dramatically reduce the occupying volume of system. Moreover, the PB phase element scheme is easily developed to produce the perfect vector beams. Therefore, our scheme may provide prominent vortex and vector sources for integrated optical communication and micromanipulation systems.
Journal Article
Flood Susceptibility Assessment with Random Sampling Strategy in Ensemble Learning (RF and XGBoost)
2024
Due to the complex interaction of urban and mountainous floods, assessing flood susceptibility in mountainous urban areas presents a challenging task in environmental research and risk analysis. Data-driven machine learning methods can evaluate flood susceptibility in mountainous urban areas lacking essential hydrological data, utilizing remote sensing data and limited historical inundation records. In this study, two ensemble learning algorithms, Random Forest (RF) and XGBoost, were adopted to assess the flood susceptibility of Kunming, a typical mountainous urban area prone to severe flood disasters. A flood inventory was created using flood observations from 2018 to 2022. The spatial database included 10 explanatory factors, encompassing climatic, geomorphic, and anthropogenic factors. Artificial Neural Network (ANN) and Support Vector Machine (SVM) were selected for model comparison. To minimize the influence of expert opinions on model training, this study employed a strategy of uniformly random sampling in historically non-flooded areas for negative sample selection. The results demonstrated that (1) ensemble learning algorithms offer higher accuracy than other machine learning methods, with RF achieving the highest accuracy, evidenced by an area under the curve (AUC) of 0.87, followed by XGBoost at 0.84, surpassing both ANN (0.83) and SVM (0.82); (2) the interpretability of ensemble learning highlighted the differences in the potential distribution of the training data’s positive and negative samples. Feature importance in ensemble learning can be utilized to minimize human bias in the collection of flooded-site samples, more targeted flood susceptibility maps of the study area’s road network were obtained; and (3) ensemble learning algorithms exhibited greater stability and robustness in datasets with varied negative samples, as evidenced by their performance in F1-Score, Kappa, and AUC metrics. This paper further substantiates the superiority of ensemble learning in flood susceptibility assessment tasks from the perspectives of accuracy, interpretability, and robustness, enhances the understanding of the impact of negative samples on such assessments, and optimizes the specific process for urban flood susceptibility assessment using data-driven methods.
Journal Article