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result(s) for
"Paula, Thiago Rosado de"
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Identification of a Flexible Fixed-Wing Aircraft Using Different Artificial Neural Network Structures
by
Moura, Éder Alves de
,
Fernandes, Vitor Paixão
,
Silva, Roberto Gil Annes da
in
Accuracy
,
Aerodynamic coefficients
,
Aerodynamics
2026
This work proposes an analysis of the capability of three deep learning models—the feedforward neural network (FFNN), long short-term memory (LSTM) network, and physics-informed neural network (PINN)—to identify the parameters of a flexible fixed-wing aircraft using in-flight data. These neural networks, composed of multiple hidden layers, are evaluated for their ability to perform system identification and to capture the nonlinear and dynamic behavior of the aircraft. The FNN and LSTM models are compared to assess the impact of temporal dependency learning on parameter estimation, while the PINN integrates prior knowledge of the system’s governing of ordinary differential equations (ODEs) to enhance physical consistency in the identification process. The objective is to exploit the generalization capability of neural network-based models while preserving the accurate estimation of the physical parameters that characterize the analyzed system. The neural networks are evaluated for their ability to perform system identification and capture the nonlinear behavior of the aircraft. The results show that the FFNN achieved the best overall performance, with average Theil’s inequality coefficient (TIC) values of 0.162 during training and 0.386 during testing, efficiently modeling the input-output relationships but tending to fit high-frequency measurement noise. The LSTM network demonstrated superior noise robustness due to its temporal filtering capability, producing smoother predictions with average TIC values of 0.398 (training) and 0.408 (testing), albeit with some amplitude underestimation. The PINN, while successfully integrating physical constraints through pretraining with target aerodynamic derivatives, showed more complex convergence, with average TIC values of 0.243 (training) and 0.475 (testing), and its estimated aerodynamic coefficients differed significantly from the conventional values. All three architectures effectively captured the coupled rigid-body and flexible dynamics when trained with distributed wing sensor data, demonstrating that neural network-based approaches can model aeroelastic phenomena without requiring explicit high-fidelity flexible-body models. This study provides a comparative framework for selecting appropriate neural network architectures based on the specific requirements of aircraft system identification tasks.
Journal Article
System identification in time domain of flexible aircraft using panel methods
by
Fernandes, Vitor Paixão
,
Sandoval Góes, Luiz Carlos
,
Silva, Roberto Gil Annes da
in
Aerodynamics
,
Aeronautics
,
Aircraft
2024
The motivation to accurately model the dynamics of flexible aircraft grew with the development of energy-efficient aircraft, consequently, great aspect ratio aircraft. The development of an accurate model that represents the flight dynamics of a flexible aircraft has been pursued by industry and aeronautical research organizations during the last decades. One of these approaches is to find a flexible aircraft model using systems identification methods. This research aims to apply an integrated model containing longitudinal and lateral directional rigid body dynamics, coupled to the first four flexible body modes, for identification and validation from flight test data. The Unmanned Aerial Vehicle (UAV) Eolo with the flexible wing is used during the experiments. Initially, a finite element structural model (FEM) based on beam elements, concentrated masses, and rigid bars was used. The quasi-stationary panel model based on the Vortex Lattice Method (VLM) was adopted for the aerodynamic model. Two diagonal matrices were used to correct the aerodynamic influence coefficients (AIC) matrix obtained via VLM before and post-multiplication for aircraft identification. The estimation of the main diagonal elements of each matrix was obtained through the Output Error Method in the time domain. A model validation analysis was carried out, which shows a good correlation between the model and measurement data. In conclusion, getting correction matrices instead of stability derivatives is beneficial because matrices can be used more directly during the aeronautical design and observe the behavior concerning loads.
Journal Article
Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment
by
Sousa, Thiago J.
,
Brenig, Bertram
,
Medeiros, Laenne G.
in
Anoxybacillus
,
Anoxybacillus flavithermus
,
Antarctic region
2022
Antarctica is a mosaic of extremes. It harbors active polar volcanoes, such as Deception Island, a marine stratovolcano having notable temperature gradients over very short distances, with the temperature reaching up to 100 °C near the fumaroles and subzero temperatures being noted in the glaciers. From the sediments of Deception Island, we isolated representatives of the genus Anoxybacillus, a widely spread genus that is mainly encountered in thermophilic environments. However, the phylogeny of this genus and its adaptive mechanisms in the geothermal sites of cold environments remain unknown. To the best of our knowledge, this is the first study to unravel the genomic features and provide insights into the phylogenomics and metabolic potential of members of the genus Anoxybacillus inhabiting the Antarctic thermophilic ecosystem. Here, we report the genome sequencing data of seven A. flavithermus strains isolated from two geothermal sites on Deception Island, Antarctic Peninsula. Their genomes were approximately 3.0 Mb in size, had a G + C ratio of 42%, and were predicted to encode 3500 proteins on average. We observed that the strains were phylogenomically closest to each other (Average Nucleotide Identity (ANI) > 98%) and to A. flavithermus (ANI 95%). In silico genomic analysis revealed 15 resistance and metabolic islands, as well as genes related to genome stabilization, DNA repair systems against UV radiation threats, temperature adaptation, heat- and cold-shock proteins (Csps), and resistance to alkaline conditions. Remarkably, glycosyl hydrolase enzyme-encoding genes, secondary metabolites, and prophage sequences were predicted, revealing metabolic and cellular capabilities for potential biotechnological applications.
Journal Article
Unraveling the Roles of Epigenetic Regulators During the Embryonic Development of Rhipicephalus microplus
by
de Paula Li Yasumura, Juan Diego
,
Uhl, Marcelle
,
Galina, Antonio
in
Animals
,
Arthropod Proteins - genetics
,
Arthropod Proteins - metabolism
2025
Epigenetic modifications are long-lasting changes to the genome that influence a cell’s transcriptional potential, thereby altering its function. These modifications can trigger adaptive responses that impact protein expression and various cellular processes, including differentiation and growth. The primary epigenetic mechanisms identified to date include DNA and RNA methylation, histone modifications, and microRNA-mediated regulation of gene expression. The intricate crosstalk among these mechanisms makes epigenetics a compelling field for the development of novel control strategies, particularly through the use of epigenetic drugs targeting arthropod vectors such as ticks. In this study, we identified the Rhipicephalus microplus orthologs of canonical histone-modifying enzymes, along with components of the machinery responsible for m5C and 6mA-DNA, and m6A-RNA methylations. We further characterized their transcriptional profiles and enzymatic activities during embryonic development. To explore the functional consequences of epigenetic regulation in R. microplus, we evaluated the effects of various epigenetic inhibitors on the BME26 tick embryonic cell line. Molecular docking simulations were performed to predict the binding modes of these inhibitors to tick enzymes, followed by in vitro assessment of their effects on cell viability and morphology. Tick cells exposed to these inhibitors presented phenotypic and molecular alterations. Notably, we observed high levels of DNA methylation in the nuclear genome. Importantly, inhibition of DNA methylation using 5′-azacytidine (5′-AZA) was associated with increased activity of the mitochondrial electron transport chain and ATP synthesis but reduced cellular proliferation. Our findings highlight the importance of epigenetic regulation during tick embryogenesis and suggest that targeting these pathways may constitute a novel and promising strategy for tick control.
Journal Article
Unraveling the Genomic Potential of the Thermophilic Bacterium IAnoxybacillus flavithermus/I from an Antarctic Geothermal Environment
by
Brenig, Bertram
,
Schultz, Júnia
,
Sousa, Thiago J
in
Antarctica
,
Bacillaceae
,
Bacteria, Thermophilic
2022
Antarctica is a mosaic of extremes. It harbors active polar volcanoes, such as Deception Island, a marine stratovolcano having notable temperature gradients over very short distances, with the temperature reaching up to 100 °C near the fumaroles and subzero temperatures being noted in the glaciers. From the sediments of Deception Island, we isolated representatives of the genus Anoxybacillus, a widely spread genus that is mainly encountered in thermophilic environments. However, the phylogeny of this genus and its adaptive mechanisms in the geothermal sites of cold environments remain unknown. To the best of our knowledge, this is the first study to unravel the genomic features and provide insights into the phylogenomics and metabolic potential of members of the genus Anoxybacillus inhabiting the Antarctic thermophilic ecosystem. Here, we report the genome sequencing data of seven A. flavithermus strains isolated from two geothermal sites on Deception Island, Antarctic Peninsula. Their genomes were approximately 3.0 Mb in size, had a G + C ratio of 42%, and were predicted to encode 3500 proteins on average. We observed that the strains were phylogenomically closest to each other (Average Nucleotide Identity (ANI) > 98%) and to A. flavithermus (ANI 95%). In silico genomic analysis revealed 15 resistance and metabolic islands, as well as genes related to genome stabilization, DNA repair systems against UV radiation threats, temperature adaptation, heat- and cold-shock proteins (Csps), and resistance to alkaline conditions. Remarkably, glycosyl hydrolase enzyme-encoding genes, secondary metabolites, and prophage sequences were predicted, revealing metabolic and cellular capabilities for potential biotechnological applications.
Journal Article
Unravelling the role of epigenetic regulators during embryonic development of Rhipicephalus micropolus
Epigenetic modifications are long-lasting changes to the genome that influence a cell's transcriptional potential, thereby altering its function. These modifications can trigger adaptive responses that impact protein expression and various cellular processes, including differentiation and growth. The primary epigenetic mechanisms identified to date include DNA and RNA methylation, histone modifications, and microRNA-mediated regulation of gene expression. The intricate crosstalk among these mechanisms makes epigenetics a compelling field for the development of novel control strategies, particularly through the use of epigenetic drugs targeting arthropod vectors such as ticks. In this study, we identified the Rhipicephalus microplus orthologs of canonical histone-modifying enzymes, along with components of the machinery responsible for m5C and 6mA-DNA, and m6A-RNA methylations. We further characterized their transcriptional profiles and enzymatic activities during embryonic development. To explore the functional consequences of epigenetic regulation in R. microplus, we evaluated the effects of various epigenetic inhibitors on the BME26 tick embryonic cell line. Molecular docking simulations were performed to predict the binding mode of these inhibitors to tick enzymes, followed by in vitro assessment of their effects on cell viability and morphology. Tick cells exposed to these inhibitors exhibited phenotypic and molecular alterations. Notably, we observed higher levels of DNA methylation in the mitochondrial genome compared to nuclear DNA. Inhibition of DNA methylation using 5-azacytidine (5-AZA) was associated with increased activity of the mitochondrial electron transport chain and ATP synthesis, but reduced cellular proliferation. Our findings highlight the importance of epigenetic regulation during tick embryogenesis and suggest that targeting these pathways may offer a novel and promising strategy for tick control.Epigenetic modifications are long-lasting changes to the genome that influence a cell's transcriptional potential, thereby altering its function. These modifications can trigger adaptive responses that impact protein expression and various cellular processes, including differentiation and growth. The primary epigenetic mechanisms identified to date include DNA and RNA methylation, histone modifications, and microRNA-mediated regulation of gene expression. The intricate crosstalk among these mechanisms makes epigenetics a compelling field for the development of novel control strategies, particularly through the use of epigenetic drugs targeting arthropod vectors such as ticks. In this study, we identified the Rhipicephalus microplus orthologs of canonical histone-modifying enzymes, along with components of the machinery responsible for m5C and 6mA-DNA, and m6A-RNA methylations. We further characterized their transcriptional profiles and enzymatic activities during embryonic development. To explore the functional consequences of epigenetic regulation in R. microplus, we evaluated the effects of various epigenetic inhibitors on the BME26 tick embryonic cell line. Molecular docking simulations were performed to predict the binding mode of these inhibitors to tick enzymes, followed by in vitro assessment of their effects on cell viability and morphology. Tick cells exposed to these inhibitors exhibited phenotypic and molecular alterations. Notably, we observed higher levels of DNA methylation in the mitochondrial genome compared to nuclear DNA. Inhibition of DNA methylation using 5-azacytidine (5-AZA) was associated with increased activity of the mitochondrial electron transport chain and ATP synthesis, but reduced cellular proliferation. Our findings highlight the importance of epigenetic regulation during tick embryogenesis and suggest that targeting these pathways may offer a novel and promising strategy for tick control.
Journal Article
Unravelling the role of epigenetic regulators during embryonic development of Rhipicephalus microplus
2025
Epigenetic modifications are long-lasting changes to the genome that influence a cell's transcriptional potential, thereby altering its function. These modifications can trigger adaptive responses that impact protein expression and various cellular processes, including differentiation and growth. The primary epigenetic mechanisms identified to date include DNA and RNA methylation, histone modifications, and microRNA-mediated regulation of gene expression. The intricate crosstalk among these mechanisms makes epigenetics a compelling field for the development of novel control strategies, particularly through the use of epigenetic drugs targeting arthropod vectors such as ticks. In this study, we identified the
orthologs of canonical histone-modifying enzymes, along with components of the machinery responsible for m
C and
mA-DNA, and m
A-RNA methylations. We further characterized their transcriptional profiles and enzymatic activities during embryonic development. To explore the functional consequences of epigenetic regulation in
, we evaluated the effects of various epigenetic inhibitors on the BME26 tick embryonic cell line. Molecular docking simulations were performed to predict the binding mode of these inhibitors to tick enzymes, followed by
assessment of their effects on cell viability and morphology. Tick cells exposed to these inhibitors exhibited phenotypic and molecular alterations. Notably, we observed higher levels of DNA methylation in the mitochondrial genome compared to nuclear DNA. Inhibition of DNA methylation using 5'-azacytidine (5'-AZA) was associated with increased activity of the mitochondrial electron transport chain and ATP synthesis, but reduced cellular proliferation. Our findings highlight the importance of epigenetic regulation during tick embryogenesis and suggest that targeting these pathways may offer a novel and promising strategy for tick control.
Journal Article