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26
result(s) for
"Saadeh, Heba"
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A Novel Key Distribution for Mobile Patient Authentication Inspired by the Federated Learning Concept and Based on the Diffie–Hellman Elliptic Curve
by
AbuAlghanam, Orieb
,
Alazzam, Hadeel
,
Saadeh, Heba
in
Access control
,
Algorithms
,
Artificial intelligence
2025
Ensuring secure communication for mobile patients in e-healthcare requires an efficient and robust key distribution mechanism. This study introduces a novel hierarchical key distribution architecture inspired by federated learning (FL), enabling seamless authentication for patients moving across different healthcare centers. Unlike existing approaches, the proposed system allows a central healthcare authority to share global security parameters with subordinate units, which then combine these with their own local parameters to generate and distribute symmetric keys to mobile patients. This FL-inspired method ensures that patients only need to store a single key, significantly reducing storage overhead while maintaining security. The architecture was rigorously evaluated using SPAN-AVISPA for formal security verification and BAN logic for authentication protocol analysis. Performance metrics—including storage, computation, and communication costs—were assessed, demonstrating that the system minimizes the computational load and reduces the number of exchanged messages during authentication compared to traditional methods. By leveraging FL principles, the solution enhances scalability and efficiency, particularly in dynamic healthcare environments where patients frequently switch between facilities. This work bridges a critical gap in e-healthcare security, offering a lightweight, scalable, and secure key distribution framework tailored for mobile patient authentication.
Journal Article
DNA methylation and gene expression changes derived from assisted reproductive technologies can be decreased by reproductive fluids
by
Soriano-Úbeda, Cristina
,
Ivanova, Elena
,
Andrews, Simon
in
Animals
,
blastocyst
,
Blastocyst - physiology
2017
The number of children born since the origin of Assisted Reproductive Technologies (ART) exceeds 5 million. The majority seem healthy, but a higher frequency of defects has been reported among ART-conceived infants, suggesting an epigenetic cost. We report the first whole-genome DNA methylation datasets from single pig blastocysts showing differences between in vivo and in vitro produced embryos. Blastocysts were produced in vitro either without (C-IVF) or in the presence of natural reproductive fluids (Natur-IVF). Natur-IVF embryos were of higher quality than C-IVF in terms of cell number and hatching ability. RNA-Seq and DNA methylation analyses showed that Natur-IVF embryos have expression and methylation patterns closer to in vivo blastocysts. Genes involved in reprogramming, imprinting and development were affected by culture, with fewer aberrations in Natur-IVF embryos. Methylation analysis detected methylated changes in C-IVF, but not in Natur-IVF, at genes whose methylation could be critical, such as IGF2R and NNAT. Infertility has become more common in many countries, particularly those where many people delay having children until later in life. To help individuals experiencing infertility conceive a child, scientists have developed treatments called assisted reproductive technologies (or ARTs for short). So far, more than 5 million children have been born with the help of these treatments. Most of the children seem healthy; however, birth defects are more common in ART-conceived babies than those conceived without treatment. The cause of these birth defects is not known, though scientists suspect it may have something to do with techniques used in ART. One possible culprit is the liquid that is used in the laboratory to help the parents’ sperm and egg come together for fertilization. This same liquid is also used to bathe the developing embryo for the first few days after fertilization before it is implanted into its mother’s womb. Some scientists wonder whether adding the fluids normally found in the reproductive tract of their mother to this liquid could reduce defects in children conceived via ART. Now, Canovas et al. have shown that fertilizing and growing pig embryos in liquids supplemented with fluid from the wombs of female pigs results in embryos that are closer to naturally conceived pig embryos than in non-supplemented liquids. In the experiments, naturally conceived embryos were compared to ART embryos exposed to the usual liquids and with ART embryos grown in liquids with fluid collected from the pig’s reproductive tract added. Cutting edge technologies were used to sequence the entire genomes of all of the embryos and compare which genes were active in each case. Canovas et al. also looked at chemical markers on the DNA – called epigenetic changes – that turn on or off the expression of genes without changing the DNA code itself. The analysis showed that ART-conceived embryos grown in the usual liquid had different patterns of gene expression and epigenetic changes compared to naturally conceived embryos. Gene expression and epigenetic changes in the ART embryos grown with the pig reproductive fluid was more similar to the naturally conceived embryos. These findings suggest that abnormal gene expression in the ART-liquid exposed embryos may lead to birth defects, and that using natural reproductive fluids may be safer. To confirm this, scientists will have to implant embryos conceived in these three different conditions into mother pigs and assess the health and gene expression patterns of the resulting piglets. If successful, these new insights might one day lead to improvements in ART techniques used to treat infertility in people.
Journal Article
Healthcare knowledge graph construction: A systematic review of the state-of-the-art, open issues, and opportunities
2023
The incorporation of data analytics in the healthcare industry has made significant progress, driven by the demand for efficient and effective big data analytics solutions. Knowledge graphs (KGs) have proven utility in this arena and are rooted in a number of healthcare applications to furnish better data representation and knowledge inference. However, in conjunction with a lack of a representative KG construction taxonomy, several existing approaches in this designated domain are inadequate and inferior. This paper is the first to provide a comprehensive taxonomy and a bird’s eye view of healthcare KG construction. Additionally, a thorough examination of the current state-of-the-art techniques drawn from academic works relevant to various healthcare contexts is carried out. These techniques are critically evaluated in terms of methods used for knowledge extraction, types of the knowledge base and sources, and the incorporated evaluation protocols. Finally, several research findings and existing issues in the literature are reported and discussed, opening horizons for future research in this vibrant area.
Journal Article
Time-aware domain-based social influence prediction
by
Chan, Kit Yan
,
Bremie, Bushra
,
Issa, Tomayess
in
Attitudes
,
Big Data
,
Communications Engineering
2020
Online social networks have established virtual platforms enabling people to express their opinions, interests and thoughts in a variety of contexts and domains, allowing legitimate users as well as spammers and other untrustworthy users to publish and spread their content. Hence, it is vital to have an accurate understanding of the contextual content of social users, thus establishing grounds for measuring their social influence accordingly. In particular, there is the need for a better understanding of domain-based social trust to improve and expand the analysis process and determining the credibility of Social Big Data. The aim of this paper is to determine domain-based social influencers by means of a framework that incorporates semantic analysis and machine learning modules to measure and predict users’ credibility in numerous domains at different time periods. The evaluation of the experiment conducted herein validates the applicability of semantic analysis and machine learning techniques in detecting highly trustworthy domain-based influencers.
Journal Article
Exploring the relationship between intravenous iron therapy and troponin T levels in hemodialysis patients: a cross-sectional study
2025
Background
Cardiac troponin T is often elevated in hemodialysis patients, even without apparent heart disease. Cardiac troponin T has been used to predict mortality and morbidity among asymptomatic dialysis patients. However, only a single retrospective study has reported that higher IV iron use was associated with higher troponin levels; therefore, it remains unclear whether IV iron therapy could influence troponin levels and thus affect patients’ outcomes.
Methods
A cross-sectional study was conducted from February 2023 to October 2024 at the dialysis unit. We included 244 patients who had been on hemodialysis for more than 3 months, were on IV iron therapy, and were aged 18 years or older. High-sensitivity troponin T level (h-cTnT) was measured before the start of the dialysis session, and patients were stratified into two groups based on h-cTnT (≤ 60 ng/L and > 60 ng/L).
Results
Among 224 hemodialysis patients (137 male, 87 female; mean age of 59.96 ± 13.02 years). The average IV iron dose was 255.5 ± 143.0 mg/month. hs-TnT levels averaged 90.5 ± 89.4 ng/L, with 58.5% (131 patients) have h-cTnT level > 60 ng/L. No significant relationship between IV iron and h-cTnT was found. However, higher h-cTnT levels were significantly associated with male gender, age, ischemic heart disease, cerebrovascular accidents, statin use, and doxazosin. The > 60 ng/L group had a significantly lower processed blood volume (
p
= 0.038), shorter effective treatment time (
p
= 0.021), and lower KT/V urea (
p
= 0.008). Albumin levels were also lower in this group (
p
= 0.018).
Conclusion
There is no statistically significant relationship between h-cTnT and IV iron. However, these results don’t eliminate the importance of IV iron therapy in hemodialysis patients.
Clinical trial number
Not applicable.
Journal Article
Whom Should Be Saved? A Proposed Ethical Framework for Allocating Scarce Medical Resources to COVID-19 Patients Using Fuzzy Logic
2021
COVID-19 is a global pandemic that affected the everyday life activities of billions around the world. It is an unprecedented crisis that the modern world had never experienced before. It mainly affected the economic state and the health care system. The rapid and increasing number of infected patients overwhelmed the healthcare infrastructure, which causes high demand and, thus, shortage in the required staff members and medical resources. This shortage necessitates practical and ethical suggestions to guide clinicians and medical centers when allocating and reallocating scarce resources for and between COVID-19 patients. Many studies proposed a set of ethical principles that should be applied and implemented to address this problem. In this study, five different ethical principles based on the most commonly recommended principles and aligned with WHO guidelines and state-of-the-art practices proposed in the literature were identified, and recommendations for their applications were discussed. Furthermore, a recent study highlighted physicians' propensity to apply a combination of more than one ethical principle while prioritizing the medical resource allocation. Based on that, an ethical framework that is based on Fuzzy inference systems was proposed. The proposed framework's input is the identified ethical principles, and the output is a weighted value (per patient). This value can be used as a rank or a priority factor given to the patients based on their condition and other relevant information, like the severity of their disease status. The main idea of implementing fuzzy logic in the framework is to combine more than one principle when calculating the weighted value, hence mimicking what some physicians apply in practice. Moreover, the framework's rules are aligned with the identified ethical principles. This framework can help clinicians and guide them while making critical decisions to allocate/reallocate the limited medical resources during the current COVID-19 crisis and future similar pandemics.
Journal Article
Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
by
Andrews, Simon R.
,
Kim, Jeesun
,
Smallwood, Sébastien A.
in
Acquisitions & mergers
,
Animal Genetics and Genomics
,
Animals
2017
Background
Gametogenesis in mammals entails profound re-patterning of the epigenome. In the female germline, DNA methylation is acquired late in oogenesis from an essentially unmethylated baseline and is established largely as a consequence of transcription events. Molecular and functional studies have shown that imprinted genes become methylated at different times during oocyte growth; however, little is known about the kinetics of methylation gain genome wide and the reasons for asynchrony in methylation at imprinted loci.
Results
Given the predominant role of transcription, we sought to investigate whether transcription timing is rate limiting for de novo methylation and determines the asynchrony of methylation events. Therefore, we generated genome-wide methylation and transcriptome maps of size-selected, growing oocytes to capture the onset and progression of methylation. We find that most sequence elements, including most classes of transposable elements, acquire methylation at similar rates overall. However, methylation of CpG islands (CGIs) is delayed compared with the genome average and there are reproducible differences amongst CGIs in onset of methylation. Although more highly transcribed genes acquire methylation earlier, the major transitions in the oocyte transcriptome occur well before the de novo methylation phase, indicating that transcription is generally not rate limiting in conferring permissiveness to DNA methylation. Instead, CGI methylation timing negatively correlates with enrichment for histone 3 lysine 4 (H3K4) methylation and dependence on the H3K4 demethylases KDM1A and KDM1B, implicating chromatin remodelling as a major determinant of methylation timing. We also identified differential enrichment of transcription factor binding motifs in CGIs acquiring methylation early or late in oocyte growth. By combining these parameters into multiple regression models, we were able to account for about a fifth of the variation in methylation timing of CGIs. Finally, we show that establishment of non-CpG methylation, which is prevalent in fully grown oocytes, and methylation over non-transcribed regions, are later events in oogenesis.
Conclusions
These results do not support a major role for transcriptional transitions in the time of onset of DNA methylation in the oocyte, but suggest a model in which sequences least dependent on chromatin remodelling are the earliest to become permissive for methylation.
Journal Article
Erratum to: Deep sequencing and de novo assembly of the mouse occyte transcriptome define the contribution of transcription to the DNA methylation landscape
by
Smallwood, Sebastien A.
,
Arnaud, Philippe
,
Andrews, Simon
in
Animal Genetics and Genomics
,
Bioinformatics
,
Biomedical and Life Sciences
2015
Journal Article
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
by
Andrews, Simon R
,
Angermueller, Christof
,
Lee, Heather J
in
45/23
,
631/1647/2210/2213
,
Animals
2014
Single-cell bisulfite sequencing (scBS-seq) allows robust DNA methylation analysis in rare cells and heterogeneous populations.
We report a single-cell bisulfite sequencing (scBS-seq) method that can be used to accurately measure DNA methylation at up to 48.4% of CpG sites. Embryonic stem cells grown in serum or in 2i medium displayed epigenetic heterogeneity, with '2i-like' cells present in serum culture. Integration of 12 individual mouse oocyte datasets largely recapitulated the whole DNA methylome, which makes scBS-seq a versatile tool to explore DNA methylation in rare cells and heterogeneous populations.
Journal Article
Poverty Classification Using Machine Learning: The Case of Jordan
2021
The scope of this paper is focused on the multidimensional poverty problem in Jordan. Household expenditure and income surveys provide data that are used for identifying and measuring the poverty status of Jordanian households. However, carrying out such surveys is hard, time consuming, and expensive. Machine learning could revolutionize this process. The contribution of this work is the proposal of an original machine learning approach to assess and monitor the poverty status of Jordanian households. This approach takes into account all the household expenditure and income surveys that took place since the early beginning of the new millennium. This approach is accurate, inexpensive, and makes poverty identification cheaper and much closer to real-time. Data preprocessing and handling imbalanced data are major parts of this work. Various machine learning classification models are applied. The LightGBM algorithm has achieved the best performance with 81% F1-Score. The final machine learning classification model could transform efforts to track and target poverty across the country. This work demonstrates how powerful and versatile machine learning can be, and hence, it promotes for adoption across many domains in both the private sector and government.
Journal Article