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The Namibian Mesozoic successions may be remnant of a high dynamic sedimentary system that is characterized by multiple stages of sediment accumulation and erosion with contemporaneous homogenization starting with the deposition of the Permo-Carboniferous Dwyka Group strata and continues at least until the Lower Cretaceous. The Lower Cretaceous sedimentary system is interpreted to have involved at least an area covering the whole SW Gondwana, documenting the sedimentary history during the evolution from an ice house environment to an arid desert. To test the sediment homogenization hypothesis, we applied a combination of isotopic and morphometric data on detrital zircon grains, as well as whole-rock geochemical data of selected Mesozoic sandstones from Namibia. As a base for the interpretation of the detrital zircon age data we compiled a zircon age dataset with c. 44,000 analyses for the southern African region. All samples reveal a major detrital pan-African zircon age peak of c. 0.5–0.7 Ga sourced from the pan-African magmatic events occurring around the Kalahari Craton margin. The lowermost Triassic is characterized by the occurrence of additional Mesoproterozoic and Paleoproterozoic age peaks of c. 1.0–1.2 Ga and 1.8–2.0 Ga with a majority of zircon grains showing angular shapes. The protosource of these grains is interpreted to possibly be the Namaqua Metamorphic Complex and other Paleoproterozoic structural units deformed in course of the Namaqua orogeny. In contrast, other samples show a prominent Permo-Triassic age peak and completely rounded zircon grains, putatively derived from within the Gondwanides volcanic arc. The disparity in the zircon age pattern may point towards a change in provenance and also a change in the whole system of zircon recycling during the Mesozoic southern Gondwana. The Lower Triassic Neu Loore fm. are constrained to more local bedrock sources and short zircon transport distance. In contrast, zircon grains of the Middle Triassic Omingonde, the Jurassic Etjo und the Cretaceous Twyfelfontein formations are an expression for a major recycling and sediment homogenization system. The system was facilitated by an interplay between fluvial and eolian sedimentary transport systems.

Fauna is highly abundant and diverse in soils worldwide, but surprisingly little is known about how it affects soil organic matter stabilization. Here, we review how the ecological strategies of a multitude of soil faunal taxa can affect the formation and persistence of labile (particulate organic matter, POM) and stabilized soil organic matter (mineral-associated organic matter, MAOM). We propose three major mechanisms - transformation, translocation, and grazing on microorganisms - by which soil fauna alters factors deemed essential in the formation of POM and MAOM, including the quantity and decomposability of organic matter, soil mineralogy, and the abundance, location, and composition of the microbial community. Determining the relevance of these mechanisms to POM and MAOM formation in cross-disciplinary studies that cover individual taxa and more complex faunal communities, and employ physical fractionation, isotopic, and microbiological approaches is essential to advance concepts, models, and policies focused on soil organic matter and effectively manage soils as carbon sinks, nutrient stores, and providers of food.In their review, Angst et al. conceptualize how the ecological strategies of a multitude of soil faunal taxa can influence the formation of particulate and mineral-associated organic matter. The authors highlight research gaps and ways forward.

Soil organisms, including earthworms, are a key component of terrestrial ecosystems. However, little is known about their diversity, distribution, and the threats affecting them. Here, we compiled a global dataset of sampled earthworm communities from 6928 sites in 57 countries to predict patterns in earthworm diversity, abundance, and biomass. We identified that local species richness and abundance typically peaked at higher latitudes, patterns opposite to those observed in aboveground organisms. However, diversity across the entirety of the tropics may be higher than elsewhere, due to high species dissimilarity across locations. Climate variables were more important in shaping earthworm communities than soil properties or habitat cover. These findings suggest that climate change may have serious implications for earthworm communities and therefore the functions they provide.

Soil life supports the functioning and biodiversity of terrestrial ecosystems. Springtails (Collembola) are among the most abundant soil arthropods regulating soil fertility and flow of energy through above- and belowground food webs. However, the global distribution of springtail diversity and density, and how these relate to energy fluxes remains unknown. Here, using a global dataset representing 2470 sites, we estimate the total soil springtail biomass at 27.5 megatons carbon, which is threefold higher than wild terrestrial vertebrates, and record peak densities up to 2 million individuals per square meter in the tundra. Despite a 20-fold biomass difference between the tundra and the tropics, springtail energy use (community metabolism) remains similar across the latitudinal gradient, owing to the changes in temperature with latitude. Neither springtail density nor community metabolism is predicted by local species richness, which is high in the tropics, but comparably high in some temperate forests and even tundra. Changes in springtail activity may emerge from latitudinal gradients in temperature, predation and resource limitation in soil communities. Contrasting relationships of biomass, diversity and activity of springtail communities with temperature suggest that climate warming will alter fundamental soil biodiversity metrics in different directions, potentially restructuring terrestrial food webs and affecting soil functioning.

Collinearity refers to the non independence of predictor variables, usually in a regression-type analysis. It is a common feature of any descriptive ecological data set and can be a problem for parameter estimation because it inflates the variance of regression parameters and hence potentially leads to the wrong identification of relevant predictors in a statistical model. Collinearity is a severe problem when a model is trained on data from one region or time, and predicted to another with a different or unknown structure of collinearity. To demonstrate the reach of the problem of collinearity in ecology, we show how relationships among predictors differ between biomes, change over spatial scales and through time. Across disciplines, different approaches to addressing collinearity problems have been developed, ranging from clustering of predictors, threshold-based pre-selection, through latent variable methods, to shrinkage and regularisation. Using simulated data with five predictor-response relationships of increasing complexity and eight levels of collinearity we compared ways to address collinearity with standard multiple regression and machine-learning approaches. We assessed the performance of each approach by testing its impact on prediction to new data. In the extreme, we tested whether the methods were able to identify the true underlying relationship in a training dataset with strong collinearity by evaluating its performance on a test dataset without any collinearity. We found that methods specifically designed for collinearity, such as latent variable methods and tree based models, did not outperform the traditional GLM and threshold-based pre-selection. Our results highlight the value of GLM in combination with penalised methods (particularly ridge) and threshold-based pre-selection when omitted variables are considered in the final interpretation. However, all approaches tested yielded degraded predictions under change in collinearity structure and the folk lore'-thresholds of correlation coefficients between predictor variables of |r| >0.7 was an appropriate indicator for when collinearity begins to severely distort model estimation and subsequent prediction. The use of ecological understanding of the system in pre-analysis variable selection and the choice of the least sensitive statistical approaches reduce the problems of collinearity, but cannot ultimately solve them.

The duck (Anas platyrhynchos) is one of the principal natural hosts of influenza A viruses. We present the duck genome sequence and perform deep transcriptome analyses to investigate immune-related genes. Our data indicate that the duck possesses a contractive immune gene repertoire, as in chicken and zebra finch, and this repertoire has been shaped through lineage-specific duplications. We identify genes that are responsive to influenza A viruses using the lung transcriptomes of control ducks and ones that were infected with either a highly pathogenic (A/duck/Hubei/49/05) or a weakly pathogenic (A/goose/Hubei/65/05) H5N1 virus. Further, we show how the duck's defense mechanisms against influenza infection have been optimized through the diversification of its β-defensin and butyrophilin-like repertoires. These analyses, in combination with the genomic and transcriptomic data, provide a resource for characterizing the interaction between host and influenza viruses.

Tula virus (TULV) is a vole-associated hantavirus with low or no pathogenicity to humans. In the present study, 686 common voles (Microtus arvalis), 249 field voles (Microtus agrestis) and 30 water voles (Arvicola spec.) were collected at 79 sites in Germany, Luxembourg and France and screened by RT-PCR and TULV-IgG ELISA. TULV-specific RNA and/or antibodies were detected at 43 of the sites, demonstrating a geographically widespread distribution of the virus in the studied area. The TULV prevalence in common voles (16.7 %) was higher than that in field voles (9.2 %) and water voles (10.0 %). Time series data at ten trapping sites showed evidence of a lasting presence of TULV RNA within common vole populations for up to 34 months, although usually at low prevalence. Phylogenetic analysis demonstrated a strong genetic structuring of TULV sequences according to geography and independent of the rodent species, confirming the common vole as the preferential host, with spillover infections to co-occurring field and water voles. TULV phylogenetic clades showed a general association with evolutionary lineages in the common vole as assessed by mitochondrial DNA sequences on a large geographical scale, but with local-scale discrepancies in the contact areas.

In this technical note, we introduce a web-based application, the BonaRes Knowledge Library (KLIB, https://klibrary.bonares.de, last access: 26 July 2023), for the compilation and classification of scientific publications on soil processes according to the specific site conditions and experimental boundary conditions. The tool was developed based on the understanding that experimental findings in soil science are highly dependent on soil type, land use, and climate. The KLIB, therefore, goes beyond other available digital libraries by providing metadata on the site conditions and experimental settings for each publication. A number of visualization tools have been developed in the form of graphical networks to illustrate, for example, publications sharing the same type of scientific questions or soil properties that are affected by different types of drivers. This should help to explore the contents of the literature database more efficiently in order to support and facilitate the literature search efforts of the users. The KLIB is designed as a collaborative effort to encourage soil scientists to participate by entering their own studies and extending the existing database.

StoichLife: a Global Dataset of Plant and animal Elemental Content angélica L. González et al. # the elemental content of life is a key trait shaping ecology and evolution, yet organismal stoichiometry has largely been studied on a case-by-case basis. this limitation has hindered our ability to identify broad patterns and mechanisms across taxa and ecosystems. To address this, we present StoichLife, a global dataset of 28,049 records from 5,876 species spanning terrestrial, freshwater, and marine realms. Compiled from published and unpublished sources, StoichLife documents elemental content and stoichiometric ratios (%C, %N, %P, C:N, C:P, and N:P) for individual plants and animals. the dataset is standardized and, where available, includes information on taxonomy, habitat, body mass (for animals), geography, and environmental conditions such as temperature, solar radiation, and nutrient availability. By providing an unprecedented breadth of organismal stoichiometry, StoichLife enables the exploration of global patterns, ecological and evolutionary drivers, and context-dependent variations. this resource advances our understanding of the chemical makeup of life and its responses to environmental change, supporting progress in ecological stoichiometry and related fields.

Soil life supports the functioning and biodiversity of terrestrial ecosystems. Springtails (Collembola) are among the most abundant soil arthropods regulating soil fertility and flow of energy through above- and belowground food webs. However, the global distribution of springtail diversity and density, and how these relate to energy fluxes remains unknown. Here, using a global dataset representing 2470 sites, we estimate the total soil springtail biomass at 27.5 megatons carbon, which is threefold higher than wild terrestrial vertebrates, and record peak densities up to 2 million individuals per square meter in the tundra. Despite a 20-fold biomass difference between the tundra and the tropics, springtail energy use (community metabolism) remains similar across the latitudinal gradient, owing to the changes in temperature with latitude. Neither springtail density nor community metabolism is predicted by local species richness, which is high in the tropics, but comparably high in some temperate forests and even tundra. Changes in springtail activity may emerge from latitudinal gradients in temperature, predation and resource limitation in soil communities. Contrasting relationships of biomass, diversity and activity of springtail communities with temperature suggest that climate warming will alter fundamental soil biodiversity metrics in different directions, potentially restructuring terrestrial food webs and affecting soil functioning.