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Body mass is one of the most important phenotypic attributes in animal ecology and life history. This trait is widely used in the fields of ecology and macroevolution, since it influences physiology, morphological functions, and a myriad of ecological and social interactions. In this data set, our aim was to gather a comprehensive bird and mammal body mass data set from northern South America. We report body mass, discriminated by sex, for 42,022 individual birds and 7,441 mammals representing 1,317 bird species (69% of Colombia’s avifauna) and 270 mammal species (51% of Colombian mammals) from the Neotropics. The data were sourced from vouchers collected between 1942 and 2020 and from individuals captured and released at banding stations over the last two decades for birds (2000–2020) and the last decade for mammals (2010–2020), by 10 research groups and institutions in Colombia. This data set fills gaps identified in other similar databases, as it focuses on northern South America, a highly diverse Neotropical region often underrepresented in morphological data sets. We provide wide taxonomic coverage for studies interested in information both at regional and local scales. There are no copyright restrictions; the present data paper should be appropriately cited when data are used for publication. The authors would appreciate learning about research projects, teaching exercises, and other uses given to this data set and are open to contribute in further collaborations using these data.

Many parasitic insects, including lice, form close relationships with endosymbiotic bacteria that are crucial for their survival. In this study, we used genomic sequencing to investigate the distribution and evolutionary history of the bacterial genus Sodalis across a broad range of feather louse species spanning 140 genera. Phylogenomic analysis revealed significant diversity among Sodalis lineages in feather lice and robust evidence for their independent and repeated acquisition by different louse clades throughout their radiation. Among the 1020 louse genomes analysed, at least 22% contained Sodalis, distributed across 57 louse genera. Cophylogenetic analyses between the Sodalis and feather louse phylogenies indicated considerable mismatch. This phylogenetic incongruence between lice and Sodalis, along with the presence of distantly related Sodalis lineages in otherwise closely related louse species, strongly indicates repeated independent acquisition of this endosymbiont. Additionally, evidence of cospeciation among a few closely related louse species, coupled with frequent acquisition of these endosymbionts from free-living bacteria, further highlights the diverse evolutionary processes shaping Sodalis endosymbiosis in feather lice.

The diversity of permanent ectoparasites is likely underestimated due to the difficulty of collecting samples. Lice (Insecta: Phthiraptera) are permanent ectoparasites of birds and mammals; there are approximately 5,000 species described and many more undescribed, particularly in the Neotropics. We document the louse genera collected from birds sampled in Peru (2006–2007) and Colombia (2009–2016), from 22 localities across a variety of ecosystems, ranging from lowland tropical forest and Llanos to high elevation cloud forest. We identified 35 louse genera from a total of 210 bird species belonging to 37 avian families and 13 orders. These genera belong to two suborders and three families of lice: Amblycera, families Menoponidae (present on 131 bird species) and Ricinidae (39 bird species); and Ischnocera, family Philopteridae (119 bird species). We compared our bird-louse associations with data in Price et al. (2003) and recently published Neotropical studies. The majority of bird-louse associations (51.9%) were new, with most of these coming from Passeriformes, the most diverse avian order, with the most poorly known louse fauna. Finally, we found geographical variation in louse infestation and prevalence rates. With this study, we report the first comprehensive documentation of bird-louse associations for Colombia and substantially increase the known associations documented for Peru.

Common names of species are important for communicating with the general public. In principle, these names should provide an accessible way to engage with and identify species. The common names of species have historically been labile without standard guidelines, even within a language. Currently, there is no systematic assessment of how often common names communicate identifiable and biologically relevant characteristics about species. This is a salient issue in ornithology, where common names are used more often than scientific names for species of birds in written and spoken English, even by professional researchers. To gain a better understanding of the types of terminology used in the English-language common names of bird species, a group of 85 professional ornithologists and non-professional contributors classified unique descriptors in the common names of all recognized species of birds. In the AvianLexiconAtlas database produced by this work, each species’ common name is assigned to one of ten categories associated with aspects of avian biology, ecology, or human culture. Across 10,906 species of birds, 89% have names describing the biology of the species, while the remaining 11% of species have names derived from human cultural references, human names, or local non-English languages. Species with common names based on features of avian biology are more likely to be related to each other or be from the same geographic region. The crowdsourced data collection also revealed that many common names contain specialized or historic terminology unknown to many of the data collectors, and we include these terms in a glossary and gazetteer alongside the dataset. The AvianLexiconAtlas can be used as a quantitative resource to assess the state of terminology in English-language common names of birds. Future research using the database can shed light on historical approaches to nomenclature and how people engage with species through their names.

The reproductive biology of tropical hummingbirds has been documented and studied in only a small fraction of species relative to the great diversity of this group. Little has been written about breeding biology of hummingbirds at the Northern Andes Eastern Cordillera in Colombia. We present detailed information on the dates, nesting locations, construction materials, measurements of nests and eggs, and gonad development of adult specimens to augment the scant reproductive data available of 2 widely distributed highland hummingbirds, the Tyrian Metaltail (Metallura tyrianthina) and the Glowing Puffleg (Eriocnemis vestita). These data were obtained during multi-taxa collection expeditions in the high-elevation region of the Department of Boyacá, Colombia. We found 2 Tyrian Metaltail nests in February and May, and adults with enlarged gonads in August. The single Glowing Puffleg nest was found in October, adults with enlarged gonads in May and October, and a chick mortality event (possibly due to frost) in November. Nesting sites for both species were in banks where they built 2-layered cup nests. Although nest locations and construction materials were similar to what has been reported before for hummingbirds in these genera, we identified the plants of these nests' microhabitats, as well as the families and genera of liverworts, mosses, and others used as nest construction materials. The evidence of active nests and enlarged gonads of specimens collected in this study, together with observations made by previous authors, suggest that these 2 hummingbird species breed throughout most of the year at the northeastern Andes. Our data contributes to the understanding of the reproductive biology of these hummingbirds in this region.

Common names of species are important for communicating with the general public. In principle, these names should provide an accessible way to engage with and identify species. The common names of species have historically been labile without standard guidelines, even within a language. Currently, there is no systematic assessment of how often common names communicate identifiable and biologically relevant characteristics about species. This is a particular issue in ornithology, where common names are used more often than scientific names for species of birds in written and spoken English, even by professional researchers. To gain a better understanding of the types of terminology used in the common names of bird species and their frequency of use, we used a crowdsourcing approach and recruited 85 professional ornithologists and non-professional participants to classify unique descriptors in the English-language common names of all recognized bird species from around the world. Each species' common name was assigned to one of ten categories associated with aspects of avian biology, ecology, or human culture. Across 10,906 species of birds, 89% have names describing the biology of the species, while the remaining 11% of species have names derived from human cultural references or local non-English languages. Species with common names based on features of avian biology are more likely to be related to each other or be from the same geographic region. The crowdsourced data collection also revealed that many common names contained specialized or historic terminology unknown to many of the data collectors, and this was documented in a glossary and gazetteer alongside the dataset. As the first comprehensive assessment of the state of terminology in English-language common names of birds, the AvianLexiconAtlas database sheds light on historical approaches to nomenclature and provides insight into how the general public currently engages with species through their names.Competing Interest StatementThe authors have declared no competing interest.Footnotes* The title, abstract, introduction, and conclusion have been updated to present the new dataset, glossary, and gazetteer produced during this research as a research database, now called the AvianLexiconAtlas. Researchers from across academic fields can use the resources in this database to study the history of English-language bird names from a quantitative perspective. In the text we clarify the utility of this database as a resource, but have not changed any of the methods, analyses, figures, or supplemental files.* https://github.com/ajshultz/AvianLexiconAtlas

The reproductive biology of tropical hummingbirds has been documented and studied in only a small fraction of species relative to the great diversity of this group. Little has been written about breeding biology of hummingbirds at the Northern Andes Eastern Cordillera in Colombia. We present detailed information on the dates, nesting locations, construction materials, measurements of nests and eggs, and gonad development of adult specimens to augment the scant reproductive data available of 2 widely distributed highland hummingbirds, the Tyrian Metaltail (Metallura tyrianthina) and the Glowing Puffleg (Eriocnemis vestita). These data were obtained during multi-taxa collection expeditions in the high-elevation region of the Department of Boyaca, Colombia. We found 2 Tyrian Metaltail nests in February and May, and adults with enlarged gonads in August. The single Glowing Puffleg nest was found in October, adults with enlarged gonads in May and October, and a chick mortality event (possibly due to frost) in November. Nesting sites for both species were in banks where they built 2-layered cup nests. Although nest locations and construction materials were similar to what has been reported before for hummingbirds in these genera, we identified the plants of these nests' microhabitats, as well as the families and genera of liverworts, mosses, and others used as nest construction materials. The evidence of active nests and enlarged gonads of specimens collected in this study, together with observations made by previous authors, suggest that these 2 hummingbird species breed throughout most of the year at the northeastern Andes. Our data contributes to the understanding of the reproductive biology of these hummingbirds in this region. Received 29 November 2019. Accepted 18 May 2021.

The reproductive biology of tropical hummingbirds has been documented and studied in only a small fraction of species relative to the great diversity of this group. Little has been written about breeding biology of hummingbirds at the Northern Andes Eastern Cordillera in Colombia. We present detailed information on the dates, nesting locations, construction materials, measurements of nests and eggs, and gonad development of adult specimens to augment the scant reproductive data available of 2 widely distributed highland hummingbirds, the Tyrian Metaltail (Metallura tyrianthina) and the Glowing Puffleg (Eriocnemis vestita). These data were obtained during multi-taxa collection expeditions in the high-elevation region of the Department of Boyaca, Colombia. We found 2 Tyrian Metaltail nests in February and May, and adults with enlarged gonads in August. The single Glowing Puffleg nest was found in October, adults with enlarged gonads in May and October, and a chick mortality event (possibly due to frost) in November. Nesting sites for both species were in banks where they built 2-layered cup nests. Although nest locations and construction materials were similar to what has been reported before for hummingbirds in these genera, we identified the plants of these nests' microhabitats, as well as the families and genera of liverworts, mosses, and others used as nest construction materials. The evidence of active nests and enlarged gonads of specimens collected in this study, together with observations made by previous authors, suggest that these 2 hummingbird species breed throughout most of the year at the northeastern Andes. Our data contributes to the understanding of the reproductive biology of these hummingbirds in this region. Received 29 November 2019. Accepted 18 May 2021.

Many parasitic insects, including lice, form close relationships with endosymbiotic bacteria that are crucial for their survival. In this study, we used genomic sequencing to investigate the distribution and evolutionary history of the bacterial genus Sodalis across a broad range of feather louse species spanning 156 genera. Phylogenomic analysis revealed significant diversity among Sodalis lineages in feather lice, and robust evidence for their independent and repeated acquisition by different louse clades throughout their radiation. Among the 1,020 louse genomes analyzed, at least 22% contained Sodalis, distributed across 57 louse genera. Cophylogenetic analyses between the Sodalis and feather louse phylogenies indicated considerable mismatch. This phylogenetic incongruence between lice and Sodalis, along with the presence of distantly related Sodalis lineages in otherwise closely related louse species, strongly indicates repeated independent acquisition of this endosymbiont. Additionally, evidence of cospeciation among a few closely related louse species, coupled with frequent acquisition of these endosymbionts from free-living bacteria, further highlights the diverse evolutionary processes shaping Sodalis endosymbiosis in feather lice.Competing Interest StatementThe authors have declared no competing interest.