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result(s) for
"Subramani, Ramesh"
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Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products
by
Sipkema, Detmer
,
Subramani, Ramesh
in
Actinobacteria - chemistry
,
Actinomycetes
,
Anti-Bacterial Agents - chemistry
2019
Rare actinomycetes are prolific in the marine environment; however, knowledge about their diversity, distribution and biochemistry is limited. Marine rare actinomycetes represent a rather untapped source of chemically diverse secondary metabolites and novel bioactive compounds. In this review, we aim to summarize the present knowledge on the isolation, diversity, distribution and natural product discovery of marine rare actinomycetes reported from mid-2013 to 2017. A total of 97 new species, representing 9 novel genera and belonging to 27 families of marine rare actinomycetes have been reported, with the highest numbers of novel isolates from the families Pseudonocardiaceae, Demequinaceae, Micromonosporaceae and Nocardioidaceae. Additionally, this study reviewed 167 new bioactive compounds produced by 58 different rare actinomycete species representing 24 genera. Most of the compounds produced by the marine rare actinomycetes present antibacterial, antifungal, antiparasitic, anticancer or antimalarial activities. The highest numbers of natural products were derived from the genera Nocardiopsis, Micromonospora, Salinispora and Pseudonocardia. Members of the genus Micromonospora were revealed to be the richest source of chemically diverse and unique bioactive natural products.
Journal Article
Streptomyces: Still the Biggest Producer of New Natural Secondary Metabolites, a Current Perspective
by
Keyzers, Robert A.
,
Taufa, Taitusi
,
Subramani, Ramesh
in
actinobacteria
,
Actinomycetes
,
Antibiotic resistance
2022
There is a real consensus that new antibiotics are urgently needed and are the best chance for combating antibiotic resistance. The phylum Actinobacteria is one of the main producers of new antibiotics, with a recent paradigm shift whereby rare actinomycetes have been increasingly targeted as a source of new secondary metabolites for the discovery of new antibiotics. However, this review shows that the genus Streptomyces is still the largest current producer of new and innovative secondary metabolites. Between January 2015 and December 2020, a significantly high number of novel Streptomyces spp. have been isolated from different environments, including extreme environments, symbionts, terrestrial soils, sediments and also from marine environments, mainly from marine invertebrates and marine sediments. This review highlights 135 new species of Streptomyces during this 6-year period with 108 new species of Streptomyces from the terrestrial environment and 27 new species from marine sources. A brief summary of the different pre-treatment methods used for the successful isolation of some of the new species of Streptomyces is also discussed, as well as the biological activities of the isolated secondary metabolites. A total of 279 new secondary metabolites have been recorded from 121 species of Streptomyces which exhibit diverse biological activity. The greatest number of new secondary metabolites originated from the terrestrial-sourced Streptomyces spp.
Journal Article
Salicylic acid as an effective elicitor for improved taxol production in endophytic fungus Pestalotiopsis microspora
by
Chelliah, Jayabaskaran
,
Johnpaul, Muthumary
,
Srinivasan, Vishnu P.M
in
Acids
,
Analysis
,
Antineoplastic agents
2019
Salicylic acid (SA) is an effective elicitor to increase taxol production in Pestalotiopsis microspora. Addition of SA at the concentration of 300 μM yielded taxol 625.47 μg L-1, 45- fold higher than that of the control. Elicitation of the role of SA in the fungal taxol biosynthetic pathway revealed that SA enhanced reactive oxygen species and lipid peroxidation of unsaturated fatty acids of P. microspora mycelia. This oxidative process stimulates isoprene biosynthetic pathway by triggering expression of the geranylgeranyl pyrophosphate synthase gene leading to improved biosynthesis of taxol in P. microspora.
Journal Article
Marine Actinomycetes Associated with Stony Corals: A Potential Hotspot for Specialized Metabolites
by
Siro, Galana
,
Subramani, Ramesh
,
Pipite, Atanas
in
Actinobacteria
,
Actinomycetes
,
Antibiotics
2022
Microbial secondary metabolites are an important source of antibiotics currently available for combating drug-resistant pathogens. These important secondary metabolites are produced by various microorganisms, including Actinobacteria. Actinobacteria have a colossal genome with a wide array of genes that code for several bioactive metabolites and enzymes. Numerous studies have reported the isolation and screening of millions of strains of actinomycetes from various habitats for specialized metabolites worldwide. Looking at the extent of the importance of actinomycetes in various fields, corals are highlighted as a potential hotspot for untapped secondary metabolites and new bioactive metabolites. Unfortunately, knowledge about the diversity, distribution and biochemistry of marine actinomycetes compared to hard corals is limited. In this review, we aim to summarize the recent knowledge on the isolation, diversity, distribution and discovery of natural compounds from marine actinomycetes associated with hard corals. A total of 11 new species of actinomycetes, representing nine different families of actinomycetes, were recovered from hard corals during the period from 2007 to 2022. In addition, this study examined a total of 13 new compounds produced by five genera of actinomycetes reported from 2017 to 2022 with antibacterial, antifungal and cytotoxic activities. Coral-derived actinomycetes have different mechanisms of action against their competitors.
Journal Article
Plant-derived antimicrobials to fight against multi-drug-resistant human pathogens
by
Feussner, Klaus-D.
,
Subramani, Ramesh
,
Narayanasamy, Mathivanan
in
Agriculture
,
animal pathogens
,
Antibiotic resistance
2017
Antibiotic resistance is becoming a pivotal concern for public health that has accelerated the search for new antimicrobial molecules from nature. Numbers of human pathogens have inevitably evolved to become resistant to various currently available drugs causing considerable mortality and morbidity worldwide. It is apparent that novel antibiotics are urgently warranted to combat these life-threatening pathogens. In recent years, there have been an increasing number of studies to discover new bioactive compounds from plant origin with the hope to control antibiotic-resistant bacteria. This review attempts to focus and record the plant-derived compounds and plant extracts against multi-drug-resistant (MDR) pathogens including methicillin-resistant
Staphylococcus aureus
(MRSA), MDR-
Mycobacterium tuberculosis
and malarial parasites
Plasmodium
spp. reported between 2005 and 2015. During this period, a total of 110 purified compounds and 60 plant extracts were obtained from 112 different plants. The plants reviewed in this study belong to 70 different families reported from 36 countries around the world. The present review also discusses the drug resistance in bacteria and emphasizes the urge for new drugs.
Journal Article
Natural Products from Tongan Marine Organisms
by
Taufa, Taitusi
,
Subramani, Ramesh
,
Keyzers, Robert
in
Alzheimer's disease
,
Bioassays
,
Biodiversity
2021
The islands of the South Pacific Ocean have been in the limelight for natural product biodiscovery, due to their unique and pristine tropical waters and environment. The Kingdom of Tonga is an archipelago in the central Indo-Pacific Ocean, consisting of 176 islands, 36 of which are inhabited, flourishing with a rich diversity of flora and fauna. Many unique natural products with interesting bioactivities have been reported from Indo-Pacific marine sponges and other invertebrate phyla; however, there have not been any reviews published to date specifically regarding natural products from Tongan marine organisms. This review covers both known and new/novel Marine Natural Products (MNPs) and their biological activities reported from organisms collected within Tongan territorial waters up to December 2020, and includes 109 MNPs in total, the majority from the phylum Porifera. The significant biological activity of these metabolites was dominated by cytotoxicity and, by reviewing these natural products, it is apparent that the bulk of the new and interesting biologically active compounds were from organisms collected from one particular island, emphasizing the geographic variability in the chemistry between these organisms collected at different locations.
Journal Article
Culturable rare Actinomycetes: diversity, isolation and marine natural product discovery
by
Aalbersberg, William
,
Subramani, Ramesh
in
Actinobacteria
,
Actinobacteria - classification
,
Actinobacteria - genetics
2013
Rare
Actinomycetes
from underexplored marine environments are targeted in drug discovery studies due to the
Actinomycetes
’ potentially huge resource of structurally diverse natural products with unusual biological activity. Of all marine bacteria, 10 % are
Actinomycetes
, which have proven an outstanding and fascinating resource for new and potent bioactive molecules. Past and present efforts in the isolation of rare
Actinomycetes
from underexplored diverse natural habitats have resulted in the isolation of about 220 rare
Actinomycete
genera of which more than 50 taxa have been reported to be the producers of 2,500 bioactive compounds. That amount represents greater than 25 % of the total
Actinomycetes
metabolites, demonstrating that selective isolation methods are being developed and extensively applied. Due to the high rediscovery rate of known compounds from
Actinomycetes
, a renewed interest in the development of new antimicrobial agents from rare and novel
Actinomycetes
is urgently required to combat the increasing number of multidrug-resistant human pathogens. To facilitate that discovery, this review updates all selective isolation media including pretreatment and enrichment methods for the isolation of marine rare
Actinomycetes
. In addition, this review demonstrates that discovering new compounds with novel scaffolds can be increased by intensive efforts in isolating and screening rare marine genera of
Actinomycetes
. Between 2007 and mid-2013, 80 new rare
Actinomycete
species were reported from marine habitats. They belong to 23 rare families, of which three are novel, and 20 novel genera. Of them, the family
Micromonosporaceae
is dominant as a producer of promising chemical diversity.
Journal Article
Immersed Boundary Models for Quantifying Flow-Induced Mechanical Stimuli on Stem Cells Seeded on 3D Scaffolds in Perfusion Bioreactors
by
Smeets, Bart
,
Guyot, Yann
,
Luyten, Frank P.
in
Authorship
,
Biology and Life Sciences
,
Biomechanics
2016
Perfusion bioreactors regulate flow conditions in order to provide cells with oxygen, nutrients and flow-associated mechanical stimuli. Locally, these flow conditions can vary depending on the scaffold geometry, cellular confluency and amount of extra cellular matrix deposition. In this study, a novel application of the immersed boundary method was introduced in order to represent a detailed deformable cell attached to a 3D scaffold inside a perfusion bioreactor and exposed to microscopic flow. The immersed boundary model permits the prediction of mechanical effects of the local flow conditions on the cell. Incorporating stiffness values measured with atomic force microscopy and micro-flow boundary conditions obtained from computational fluid dynamics simulations on the entire scaffold, we compared cell deformation, cortical tension, normal and shear pressure between different cell shapes and locations. We observed a large effect of the precise cell location on the local shear stress and we predicted flow-induced cortical tensions in the order of 5 pN/μm, at the lower end of the range reported in literature. The proposed method provides an interesting tool to study perfusion bioreactors processes down to the level of the individual cell's micro-environment, which can further aid in the achievement of robust bioprocess control for regenerative medicine applications.
Journal Article
Two distinct fluorescent quantum clusters of gold starting from metallic nanoparticles by pH-dependent ligand etching
by
Pal, Samir Kumar
,
Pradeep, Thalappil
,
Ramesh, Subramani
in
Atomic/Molecular Structure and Spectra
,
Biomedicine
,
Biotechnology
2008
Two fluorescent quantum clusters of gold, namely Au
25
and Au
8
, have been synthesized from mercaptosuccinic acid-protected gold nanoparticles of 4–5 nm core diameter by etching with excess glutathione. While etching at pH ∼3 yielded Au
25
, that at pH 7–8 yielded Au
8
. This is the first report of the synthesis of two quantum clusters starting from a single precursor. This simple method makes it possible to synthesize well-defined clusters in gram quantities. Since these clusters are highly fluorescent and are highly biocompatible due to their low metallic content, they can be used for diagnostic applications.
Journal Article
Aurantoside K, a new antifungal tetramic acid glycoside from a Fijian marine sponge of the genus Melophlus
by
Kumar, Rohitesh
,
Feussner, Klaus D
,
Subramani, Ramesh
in
Animals
,
antifungal
,
Antifungal Agents - chemistry
2012
A new tetramic acid glycoside, aurantoside K, was isolated from a marine sponge belonging to the genus Melophlus. The structure of the compound was elucidated on the basis of spectroscopic analysis (1H NMR, 1H–1H COSY, HSQC, and HMBC, as well as high-resolution ESILCMS). Aurantoside K did not show any significant activity in antimalarial, antibacterial, or HCT-116 cytotoxicity assays, but exhibited a wide spectrum of antifungal activity against wild type Candida albicans, amphotericin-resistant C. albicans, Cryptococcus neoformans, Aspergillus niger, Penicillium sp., Rhizopus sporangia and Sordaria sp.
Journal Article