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23 result(s) for "Wang, Pengnian"
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Comparative transcriptome analysis of flower heterosis in two soybean F1 hybrids by RNA-seq
Heterosis has been widely exploited as an approach to enhance crop traits during breeding. However, its underlying molecular genetic mechanisms remain unclear. Recent advances in RNA sequencing technology (RNA-seq) have provided an opportunity to conduct transcriptome profiling for heterosis studies. We used RNA-seq to analyze the flower transcriptomes of two F1 hybrid soybeans (HYBSOY-1 and HYBSOY-5) and their parents. More than 385 million high-quality reads were generated and aligned against the soybean reference genome. A total of 681 and 899 genes were identified as being differentially expressed between HYBSOY-1 and HYBSOY-5 and their parents, respectively. These differentially expressed genes (DEGs) were categorized into four major expression categories with 12 expression patterns. Furthermore, gene ontology (GO) term analysis showed that the DEGs were enriched in the categories metabolic process and catalytic activity, while Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis found that metabolic pathway and biosynthesis of secondary metabolites were enriched in the two F1 hybrids. Comparing the DEGs of the two F1 hybrids by GO term and KEGG pathway analyses identified 26 common DEGs that showed transgressive up-regulation, and which could be considered potential candidate genes for heterosis in soybean F1 hybrids. This identification of an extensive transcriptome dataset gives a comprehensive overview of the flower transcriptomes in two F1 hybrids, and provides useful information for soybean hybrid breeding. These findings lay the foundation for future studies on molecular mechanisms underlying soybean heterosis.
Flavonoid Biosynthesis Pathway May Indirectly Affect Outcrossing Rate of Cytoplasmic Male–Sterile Lines of Soybean
(1) Background: Cytoplasmic male sterility (CMS) is important for exploiting heterosis. Soybean (Glycine max L.) has a low outcrossing rate that is detrimental for breeding sterile lines and producing hybrid seeds. Therefore, the molecular mechanism controlling the outcrossing rate should be elucidated to increase the outcrossing rate of soybean CMS lines; (2) Methods: The male–sterile soybean lines JLCMS313A (with a high outcrossing rate; HL) and JLCMS226A (with a low outcrossing rate; LL) were used for a combined analysis of the transcriptome (RNA–seq) and the targeted phenol metabolome; (3) Results: The comparison between HL and LL detected 5946 differentially expressed genes (DEGs) and 81 phenolic metabolites. The analysis of the DEGs and differentially abundant phenolic metabolites identified only one common KEGG pathway related to flavonoid biosynthesis. The qRT–PCR expression for eight DEGs was almost consistent with the transcriptome data. The comparison of the cloned coding sequence (CDS) regions of the SUS, FLS, UGT, and F3H genes between HL and LL revealed seven single nucleotide polymorphisms (SNPs) only in the F3H CDS. Moreover, five significant differentially abundant phenolic metabolites between HL and LL were associated with flavonoid metabolic pathways. Finally, on the basis of the SNPs in the F3H CDS, one derived cleaved amplified polymorphic sequence (dCAPS) marker was developed to distinguish between HL and LL soybean lines; (4) Conclusions: The flavonoid biosynthesis pathway may indirectly affect the outcrossing rate of CMS sterile lines in soybean.
“Digital Dividend” or “Digital Divide”: What Role Does the Internet Play in the Health Inequalities among Chinese Residents?
With the vigorous development of the medical industry in China, residents’ health has been significantly improved. However, along with the income gap, urban–rural gap, and healthcare resource gap caused by economic development, health inequality has become a fundamental barrier to the promotion of residents’ health. The popularity of the Internet has helped close the gap to some extent, but it also has drawbacks. Using data from the China Family Panel Studies (CFPS) from 2014 to 2018, we evaluated the effects of Internet usage on health disparities among residents using fixed effect models, mediation effect models, and other methodologies. The findings indicate that Internet usage can help to minimize health inequality since it lowers income inequality, promotes health consciousness, and reduces depression. Furthermore, Internet usage plays a greater role on the health improvement of the middle-aged, the elderly, urban residents, and females. Although the Internet has brought “digital dividends” in general, the Internet usage rates among different groups also reveal that there is a clear “digital gap” among rural residents, elderly groups, and low-income groups. These results have significant implications for promoting healthcare equality.
Cytoplasm Types Affect DNA Methylation among Different Cytoplasmic Male Sterility Lines and Their Maintainer Line in Soybean (Glycine max L.)
Cytoplasmic male sterility (CMS) lines and their maintainer line have the same nucleus but different cytoplasm types. We used three soybean (Glycine max L.) CMS lines, JLCMS9A, JLCMSZ9A, and JLCMSPI9A, and their maintainer line, JLCMS9B, to explore whether methylation levels differed in their nuclei. Whole-genome bisulfite sequencing of these four lines was performed. The results show that the cytosine methylation level in the maintainer line was lower than in the CMS lines. Compared with JLCMS9B, the Gene Ontology (GO) enrichment analysis of DMR (differentially methylated region, DMR)-related genes of JLCMS9A revealed that their different 5-methylcytosine backgrounds were enriched in molecular function, whereas JLCMSZ9A and JLCMSPI9A were enriched in biological process and cellular component. The Kyoto Encyclopedia of Genes and Genome (KEGG) analysis of DMR-related genes and different methylated promoter regions in different cytosine contexts, hypomethylation or hypermethylation, showed that the numbers of DMR-related genes and promoter regions were clearly different. According to the DNA methylation and genetic distances separately, JLCMS9A clustered with JLCMS9B, and JLCMSPI9A with JLCMSZ9A. Thus, the effects of different cytoplasm types on DNA methylation were significantly different. This may be related to their genetic distances revealed by re-sequencing these lines. The detected DMR-related genes and pathways that are probably associated with CMS are also discussed.
Repetitive learning control of nonlinear systems over finite intervals
Iterative learning control requires initial repositioning, while the time functions to be learned should be of periodicity in repetitive control. However, there are eases in practice where the time-varying unknowns are not periodic but repetitive, and repetitive learning control is applicable with avoidance of initial repositioning. In this paper, repetitive learning control designs are presented for a broader class of nonlinear systems over finite intervals. The Freeman formula is modified and used for stabilization of the nominal nonlinear time-varying system undertaken. The global stability of the learning system and asymptotic convergence of the tracking error are established through analysis of both partially and fully saturated learning algorithms, respectively. The repetitive learning control method is theoretically shown to be effective in dealing with time-varying parametric uncertainties.
Bifurcation stabilization of nonlinear systems by dynamic output feedback with application to rotating stall control
The paper deals with the problem of stabilization of stationary bifurcation solutions of nonlinear systems via dynamic output feedback. It is emphasized that the parameter of the system is not directly available. We introduce the concepts of uniform observability of the inverse of a function of state and input and N-order- input-to-state bifurcation stability. Based on the concepts, we propose a new method for designing dynamic compensators that guarantee bifurcation stability for the closed-loop system. As an example, we apply the general theory to active control of rotating stall in axial flow compressors by designing a stabilizing dynamic compensator for the three-state Moore-Greitzer model with a class of cubic compressor characteristics.
SAM2MS: An Efficient Framework for HRSI Road Extraction Powered by SAM2
Road extraction from high-resolution remote sensing images (HRSIs) provides critical support for downstream tasks such as autonomous driving path planning and urban planning. Although deep learning-based pixel-level segmentation methods have achieved significant progress, they still face challenges in handling occlusions caused by vegetation and shadows, and often exhibit limited model robustness and generalization capability. To address these limitations, this paper proposes the SAM2MS model, which leverages the powerful generalization capabilities of the foundational vision model, segment anything model 2 (SAM2). Firstly, an adapter-based fine-tuning strategy is employed to effectively transfer the capabilities of SAM2 to the HRSI road extraction task. Secondly, we subsequently designed a subtraction block (Sub) to process adjacent feature maps, effectively eliminating redundancy during the decoding phase. Multiple Subs are cascaded to form the multi-scale subtraction module (MSSM), which progressively refines local feature representations, thereby enhancing segmentation accuracy. During training, a training-free lossnet module is introduced, establishing a multi-level supervision strategy that encompasses background suppression, contour refinement, and region-of-interest consistency. Extensive experiments on three large-scale and challenging HRSI road datasets, including DeepGlobe, SpaceNet, and Massachusetts, demonstrate that SAM2MS significantly outperforms baseline methods across nearly all evaluation metrics. Furthermore, cross-dataset transfer experiments (from DeepGlobe to SpaceNet and Massachusetts) conducted without any additional training validate the model’s exceptional generalization capability and robustness.
Study on the evolution of ecological environment and irrigation behavior since mulched drip irrigation in Yanqi basin, Xinjiang
Analyzing the ecological and behavioral effects of changes in irrigation practices in oases provides valuable insights for water resource management and the sustainable development of oasis agriculture in arid regions. Taking the Yanqi Basin as a case study, this research draws on long-term empirical data and remote sensing information to evaluate the ecological and irrigation behavior effects resulting from shifts in irrigation methods. And explores the deep societal causes behind these behavioral changes. The findings demonstrate: (1). Between 2000 and 2010, the rapid adoption of groundwater extraction and mulched drip irrigation (MDI) technology temporarily alleviated the water supply-demand contradiction. However, from 2010 to 2020, as the adoption of water-saving practices significantly expanded and agricultural irrigation areas grew substantially, the irrigation paradox emerged, where increased efficiency paradoxically led to greater water consumption. (2). From 2000 to 2020, the groundwater table depth in the irrigation district dropped by 8–16 m, total soluble salt content decreased by 2–5 g/L, and soil salinity decreased by 4–12 g/kg. The proportion of severely salinized and saline soil areas fell from 21.74% in 1999 to 9.75% in 2020. The longstanding salinization issues that had plagued the irrigation district were effectively mitigated with the widespread adoption of MDI. (3). The irrigation district’s vegetation ecological quality index ( VEQI ) showed a slow but steady upward trend in cultivated areas over the years. In contrast, natural vegetation areas such as forests and grasslands exhibited an initial increase followed by a decline. The trends in VEQI responded well to changes in irrigation practices. (4). The economic benefits driven by water-saving technologies and the expansion of cultivated land are deep societal factors behind the changes in irrigation behavior. These benefits also fostered improvements in users’ understanding and awareness of irrigation practices. The shift in irrigation methods in the Yanqi Basin has led to a decline in groundwater levels, an irrigation paradox, and moderate damage to natural vegetation. However, it has had a significant positive impact on improving regional groundwater quality and mitigating soil salinization. Furthermore, it facilitates the further exploration of regional water conservation potential, enhancing the research on the regional water and soil resource management system.
Twist-mediated Epithelial-mesenchymal Transition Promotes Breast Tumor Cell Invasion via Inhibition of Hippo Pathway
Twist is a key transcription factor for Epithelial-mesenchymal transition (EMT), which is a cellular de-differentiation program that promotes invasion and metastasis, confers tumor cells with cancer stem cell (CSC)-like characteristics and increases therapeutic resistance. However, the mechanisms that facilitate the functions of Twist remain unclear. Here we report that Twist overexpression increased expression of PAR1, an upstream regulator of the Hippo pathway; PAR1 promotes invasion, migration and CSC-like properties in breast cancer by activating the transcriptional co-activator TAZ. Our study indicates that Hippo pathway inhibition is required for the increased migratory and invasiveness ability of breast cancer cells in Twist-mediated EMT.