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We conducted a national human serologic study of a hantavirus detected in Madagascar rodents using a commercial kit and a new ELISA targeting the virus. Our results suggest a conservative estimate of 2.7% (46/1,680) IgG seroprevalence. A second single-district study using the new ELISA revealed a higher prevalence (7.2%; 10/139).

Models of species ecological niches and geographic distributions now represent a widely used tool in ecology, evolution, and biogeography. However, the very common situation of species with few available occurrence localities presents major challenges for such modeling techniques, in particular regarding model complexity and evaluation. Here, we summarize the state of the field regarding these issues and provide a worked example using the technique Maxent for a small mammal endemic to Madagascar (the nesomyine rodent Eliurus majori). Two relevant model-selection approaches exist in the literature (information criteria, specifically AICc; and performance predicting withheld data, via a jackknife), but AICc is not strictly applicable to machine-learning algorithms like Maxent. We compare models chosen under each selection approach with those corresponding to Maxent default settings, both with and without spatial filtering of occurrence records to reduce the effects of sampling bias. Both selection approaches chose simpler models than those made using default settings. Furthermore, the approaches converged on a similar answer when sampling bias was taken into account, but differed markedly with the unfiltered occurrence data. Specifically, for that dataset, the models selected by AICc had substantially fewer parameters than those identified by performance on withheld data. Based on our knowledge of the study species, models chosen under both AICc and withheld-data-selection showed higher ecological plausibility when combined with spatial filtering. The results for this species intimate that AICc may consistently select models with fewer parameters and be more robust to sampling bias. To test these hypotheses and reach general conclusions, comprehensive research should be undertaken with a wide variety of real and simulated species. Meanwhile, we recommend that researchers assess the critical yet underappreciated issue of model complexity both via information criteria and performance on withheld data, comparing the results between the two approaches and taking into account ecological plausibility.

DNA-based species delimitation may be compromised by limited sampling effort and species rarity, including \"singleton\" representatives of species, which hampers estimates of intra-versus interspecies evolutionary processes. In a case study of southern African chafers (beetles in the family Scarabaeidae), many species and subclades were poorly represented and 48.5% of species were singletons. Using cox1 sequences from >500 specimens and ~100 species, the Generalized Mixed Yule Coalescent (GMYC) analysis as well as various other approaches for DNA-based species delimitation (Automatic Barcode Gap Discovery (ABGD), Poisson tree processes (PTP), Species Identifier, Statistical Parsimony), frequently produced poor results if analyzing a narrow target group only, but the performance improved when several subclades were combined. Hence, low sampling may be compensated for by \"clade addition\" of lineages outside of the focal group. Similar findings were obtained in reanalysis of published data sets of taxonomically poorly known species assemblages of insects from Madagascar. The low performance of undersampled trees is not due to high proportions of singletons per se, as shown in simulations (with 13%, 40% and 52% singletons). However, the GMYC method was highly sensitive to variable effective population size (Ne), which was exacerbated by variable species abundances in the simulations. Hence, low sampling success and rarity of species affect the power of the GMYC method only if they reflect great differences in Ne among species. Potential negative effects of skewed species abundances and prevalence of singletons are ultimately an issue about the variation in Ne and the degree to which this is correlated with the census population size and sampling success. Clade addition beyond a limited study group can overcome poor sampling for the GMYC method in particular under variable Ne. This effect was less pronounced for methods of species delimitation not based on coalescent models.

Background Bats are important reservoir hosts for a variety of pathogens, some of which are transmitted by ectoparasite vectors including mites, fleas, lice, ticks, and bat flies (families Nycteribiidae and Streblidae). All these ectoparasite taxa are known to parasitize two endemic fruit bats of Madagascar, Eidolon dupreanum and Rousettus madagascariensis . We aimed to describe the diversity of ectoparasite infestation for both bat species through morphological observation and DNA barcoding and elucidate ecological and climatic correlates of seasonal nycteribiid parasitism of these hosts. Methods Eidolon dupreanum and R. madagascariensis fruit bats were live-captured in northern and central-eastern Madagascar periodically from 2013 to 2020. Ectoparasites on all captured bats were counted and identified in the field and then collected into ethanol. Field identification of a subset of samples was confirmed via microscopy and DNA barcoding of the cytochrome C oxidase subunit 1 ( COI ) and 18S genes. The seasonal abundance of nycteribiid bat flies on both host bats was analyzed using generalized additive models, and the role of climate in driving this seasonality was assessed via cross-correlation analysis combined with generalized linear models. Phylogenetic trees were generated to compare COI and 18S sequences of Madagascar nycteribiid and streblid bat flies with available reference sequences from GenBank. Results Ectoparasites corresponding to four broad taxa (mites, ticks, fleas, and bat flies) were recovered from 628 of 873 E. dupreanum (71.9%) and 831 of 862 R. madagascariensis (96.4%). Eidolon dupreanum were most commonly parasitized by Cyclopodia dubia nycteribiids and R. madagascariensis by Eucampsipoda madagascariensis nycteribiids and Megastrebla wenzeli streblids. We observed significant seasonality in nycteribiid abundance on both bat hosts, which varied by bat sex and was positively correlated with lagged temperature, precipitation, and humidity variables. Barcoding sequences recovered for all three bat fly species grouped with previously reported sequences, confirming morphological species identification. Our study contributes the first DNA barcodes of any kind reported for M. wenzeli and the first 18S barcodes for C. dubia. Conclusions This study explores the diversity and abundance of ectoparasite burdens in two Malagasy fruit bat species, highlighting the importance of seasonal ecology and the influence of climate variables on parasitism, which correlates with resource availability. Graphical Abstract

Recent advancements have expanded the applications of fiber-optic distributed acoustic sensors (DAS), including their use in monitoring the acoustic activity of insects, which can be either harmful or beneficial to agriculture. Previous studies have demonstrated the capability of DAS to record and analyze insect-generated acoustic signals in real-world conditions; however, these studies primarily involved large insect colonies. In this work, a fiber-optic DAS is used for the first time to record the sounds produced by a single insect under controlled laboratory conditions. This was achieved using an optimized and cost-effective experimental setup designed and assembled, including a specially developed and manufactured sensing element. The results demonstrate that the fiber-optic DAS effectively captures the acoustic signals of the Madagascar hissing cockroach (Gromphadorhina portentosa), including both the mechanical interactions of the insect with the optical fiber and the characteristic hissing sound produced in response to external stimulation.

Malnutrition accounts for 45% of mortality in children under five years old, despite a global mobilization against chronic malnutrition. In Madagascar, the most recent data show that the prevalence of stunting in children under five years old is still around 47.4%. This study aimed to identify the determinants of stunting in children in rural areas of Moramanga and Morondava districts to target the main areas for intervention. A case-control study was conducted in children aged from 6 to 59.9 months, in 2014-2015. We measured the height and weight of mothers and children and collected data on child, mother and household characteristics. One stool specimen was collected from each child for intestinal parasite identification. We used a multivariate logistic regression model to identify the determinants of stunting using backwards stepwise methods. We included 894 and 932 children in Moramanga and in Morondava respectively. Stunting was highly prevalent in both areas, being 52.8% and 40.0% for Moramanga and Morondava, respectively. Stunting was most associated with a specific age period (12mo to 35mo) in the two study sites. Infection with Trichuris trichiura (aOR: 2.4, 95% CI: 1.1-5.3) and those belonging to poorer households (aOR: 2.3, 95% CI: 1.6-3.4) were the major risk factors in Moramanga. In Morondava, children whose mother had activities outside the household (aOR: 1.7, 95% CI: 1.2-2.5) and those perceived to be small at birth (aOR: 1.6, 95% CI: 1.1-2.1) were more likely to be stunted, whereas adequate birth spacing (≥24months) appeared protective (aOR: 0.4, 95% CI: 0.3-0.7). Interventions that could improve children's growth in these two areas include poverty reduction, women's empowerment, public health programmes focusing on WASH and increasing acceptability, and increased coverage and quality of child/maternal health services.

Time is considered a resource in limited supply, and temporal niche separation is one of the most common strategies that allow ecologically similar species to live in sympatry. Mechanisms of temporal niche separation are understudied especially in cryptic animals due to logistical problems in gathering adequate data. Using high-frequency accelerometers attached to radio-collars, we investigated whether the ecologically similar lemurs Avahi meridionalis and Lepilemur fleuretae in the lowland rainforest of Tsitongambarika, south-eastern Madagascar, show temporal niche separation. Accelerometers stored data with a frequency of 1 Hz for a total of 71 days on three individuals of A. meridionalis and three individuals of L. fleuretae. We extrapolated motor activity patterns via the unsupervised learning algorithm expectation maximisation and validated the results with systematic behavioural observations. Avahi meridionalis showed peaks of activity at twilights with low but consistent activity during the day, while L. fleuretae exhibited more activity in the central hours of the night. Both lemur species had their activity pattern entrained by photoperiodic variations. The pair-living A. meridionalis was found to be lunarphilic while the solitary-living L. fleuretae was lunarphobic. We suggest that these activity differences were advantageous to minimise feeding competition, as an anti-predator strategy, and/or for dietary-related benefits. These findings demonstrate a fine-tuned temporal partitioning in sympatric, ecologically similar lemur species and support the idea that an activity spread over the 24-h, defined here as cathemerality sensu lato, is more common than previously thought in lemurs.

Background The genera Agathis (Coniferales: Araucariaceae) and Hymenaea (Fabales: Fabaceae) contain resin-producing tree species that are crucial for actuotaphonomic studies. While certain Cretaceous ambers likely originated from Agathis or Agathis -like trees, Hymenaea is the primary source of many Miocene ambers. Field studies were conducted in New Caledonia and Madagascar to collect Defaunation resin (resin produced after 1760 AD (Anno Domini)). Arthropods were collected with yellow sticky and Malaise traps in New Caledonia, Madagascar, and Mexico. Cretaceous and Miocene ambers, copals (2.58 Ma to 1760 AD), and Defaunation resins from various regions were analysed to compare arthropod trapping patterns. Results Actuotaphonomic results show lower number of arthropods trapped in Agathis Defaunation resin, with a non-uniform distribution, compared to the abundant and uniformly distributed arthropods trapped in Hymenaea Defaunation resin. The lower number of arthropod inclusions in the trunk resin of the Agathis trees is attributed to the rapid polymerisation of that resin. Under the same experimental conditions, the arthropods in Agathis Defaunation resin plot far from the arthropods collected in the yellow sticky and Malaise traps, while the arthropods in Hymenaea Defaunation resin plot close to the arthropods in the yellow sticky traps. Conclusions These findings confirm different resin trapping patterns between Agathis and Hymenaea , with significant implications for interpreting the amber record. The fauna trapped by Hymenaea resin closely resembles the arthropod biocoenosis that live in and around the trunks, indicating autochthony and close relationship with the forest ecosystem, unlike Agathis resin. These results improve our understanding of arthropod trapping biases in resin and lead us to reconsider previously proposed interpretations of Cretaceous forest biocoenoses.

We explore the potential of x-ray micro computed tomography (μCT) for the field of ant taxonomy by using it to enhance the descriptions of two remarkable new species of the ant genus Terataner: T. balrog sp. n. and T. nymeria sp. n.. We provide an illustrated worker-based species identification key for all species found on Madagascar, as well as detailed taxonomic descriptions, which include diagnoses, discussions, measurements, natural history data, high-quality montage images and distribution maps for both new species. In addition to conventional morphological examination, we have used virtual reconstructions based on volumetric μCT scanning data for the species descriptions. We also include 3D PDFs, still images of virtual reconstructions, and 3D rotation videos for both holotype workers and one paratype queen. The complete μCT datasets have been made available online (Dryad, https://datadryad.org) and represent the first cybertypes in ants (and insects). We discuss the potential of μCT scanning and critically assess the usefulness of cybertypes for ant taxonomy.