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Background Oxidation-reduction and acid-base reactions are essential for the maintenance of all living organisms. However, redox potential (Eh) has received little attention in agronomy, unlike pH, which is regarded as a master variable. Agronomists are probably depriving themselves of a key factor in crop and soil science which could be a useful integrative tool. Scope This paper reviews the existing literature on Eh in various disciplines connected to agronomy, whether associated or not with pH, and then integrates this knowledge within a composite framework. Conclusions This transdisciplinary review offers evidence that Eh and pH are respectively and jointly major drivers of soil/plant/microorganism systems. Information on the roles of Eh and pH in plant and microorganism physiology and in soil genesis converges to form an operational framework for further studies of soil/plant/microorganism functioning. This framework is based on the hypothesis that plants physiologically function within a specific internal Eh-pH range and that, along with microorganisms, they alter Eh and pH in the rhizosphere to ensure homeostasis at the cell level. This new perspective could help in bridging several disciplines related to agronomy, and across micro and macro-scales. It should help to improve cropping systems design and management, in conventional, organic, and conservation agriculture.

Despite their low carbon (C) content, most subsoil horizons contribute to more than half of the total soil C stocks, and therefore need to be considered in the global C cycle. Until recently, the properties and dynamics of C in deep soils was largely ignored. The aim of this review is to synthesize literature concerning the sources, composition, mechanisms of stabilisation and destabilization of soil organic matter (SOM) stored in subsoil horizons. Organic C input into subsoils occurs in dissolved form (DOC) following preferential flow pathways, as aboveground or root litter and exudates along root channels and/or through bioturbation. The relative importance of these inputs for subsoil C distribution and dynamics still needs to be evaluated. Generally, C in deep soil horizons is characterized by high mean residence times of up to several thousand years. With few exceptions, the carbon-to-nitrogen (C/N) ratio is decreasing with soil depth, while the stable C and N isotope ratios of SOM are increasing, indicating that organic matter (OM) in deep soil horizons is highly processed. Several studies suggest that SOM in subsoils is enriched in microbial-derived C compounds and depleted in energy-rich plant material compared to topsoil SOM. However, the chemical composition of SOM in subsoils is soil-type specific and greatly influenced by pedological processes. Interaction with the mineral phase, in particular amorphous iron (Fe) and aluminum (Al) oxides was reported to be the main stabilization mechanism in acid and near neutral soils. In addition, occlusion within soil aggregates has been identified to account for a great proportion of SOM preserved in subsoils. Laboratory studies have shown that the decomposition of subsoil C with high residence times could be stimulated by addition of labile C. Other mechanisms leading to destabilisation of SOM in subsoils include disruption of the physical structure and nutrient supply to soil microorganisms. One of the most important factors leading to protection of SOM in subsoils may be the spatial separation of SOM, microorganisms and extracellular enzyme activity possibly related to the heterogeneity of C input. As a result of the different processes, stabilized SOM in subsoils is horizontally stratified. In order to better understand deep SOM dynamics and to include them into soil C models, quantitative information about C fluxes resulting from C input, stabilization and destabilization processes at the field scale are necessary.

Aims Areas affected by wildfire comprise spatially complex mosaics of burned patches in which a wide range of burn severities coexist. Rapid diagnosis of the different levels of soil burn severity and their extents is essential for designing emergency post-fire rehabilitation treatments. The main objective of this study was to determine whether visual signs of soil burn severity levels are related to changes in soil chemical and microbial properties immediately after fire. Methods Eight areas affected by wildfires in NW Spain were selected immediately after fire, and soil chemical and biological properties (pH, extractable Ca, K, Mg and P, SOC, total N, δC, basal soil respiration, Cmic, phosphatase activity, extractable NH₄⁺ and NO₃⁻, ammonification and nitrification rates and potential N mineralization) were analysed in relation to five levels of soil burn severity (0: Unburned; 1: Oa layer partially or totally intact; 2: Oa layer totally charred; 3: Bare soil and soil structure unaffected; 4: Bare soil and soil structure affected; 5: Bare soil and surface soil structure and colour altered). Results The five visually assessed levels of soil burn severity adequately reflected changes in SOC, pH, and phosphatase activity, which varied gradually with increasing soil burn severity. However, alterations in certain indicators related to the soil organic quality (C/N, Cmic/SOC, qCO₂, δ¹³C) were only detected in the most severely burned areas. Discriminant analysis revealed that the best combination of variables was acid phosphatase activity, SOC and pH, which correctly classified between 64 and 76 % of samples, depending on the levels of soil burn severity considered. Conclusions The results showed that the proposed soil burn severity categories may be useful for indicating the degree of degradation of important soil chemical and microbiological properties in sites similar to the study area. This, in combination with other factors, will allow prioritization of areas for rehabilitation.

AIMS: We estimate organic carbon (C): total nitrogen (N): total phosphorus (P) ratios in soils under Australia’s major native vegetation groups. METHODS: We use digital datasets for climate, soils, and vegetation created for the National Land and Water Resources Audit in 2001. Analysis-of-variance is used to investigate differences in nutrient ratios between ecosystems. Linear discriminant analysis and logistic regression are used to investigate the relative importance of climatic variables and soil nutrients in vegetation patterns. RESULTS: We find that the N:P and C:P ratios have a greater range of values than the C:N ratio, although major vegetation groups tend to show similar trends across all three ratios. Some apparently homeostatic groupings emerge: those with very low, low, medium, or high N:P and C:P. Tussock grasslands have very low soil N, N:P, and C:P, probably due to frequent burning. Eucalypt woodlands have low soil N:P and C:P ratios, although their total P level varies. Rainforests and Melaleuca forests have medium soil N:P and C:P ratios, although their total P level is different. Heathlands, tall open eucalypt forests, and shrublands occur on soils with low levels of total P, and high N:P and C:P ratios that reflect foliar nutrient ratios and recalcitrant litter. CONCLUSIONS: Certain plant communities have typical soil nutrient stoichiometries but there is no single Redfield-like ratio. Vegetation patterns largely reflect soil moisture but for several plant communities, eucalypt communities in particular, soil N and P (or N:P) also play a significant role. Soil N:P and the presence of Proteaceae appear indicative of nutrient constraints in ecosystems.

Background and Aims Biochar has been shown to aid soil fertility and crop production in some circumstances. We investigated effects of the addition of Jarrah (Eucalyptus marginata) biochar to a coarse textured soil on soil carbon and nitrogen dynamics. Methods Wheat was grown for 10 weeks, in soil treated with biochar (0, 5, or 25 t ha−1) in full factorial combination with nitrogen (N) treatments (organic N, inorganic N, or control). Samples were analysed for plant biomass, soil microbial biomass carbon (MBC) and nitrogen (MBN), N mineralisation, CO2 evolution, community level physiological profiles (CLPP) and ammonia oxidising bacterial community structure. Results MBC significantly decreased with biochar addition while MBN was unaltered. Net N mineralisation was highest in control soil and significantly decreased with increasing addition of biochar. These findings could not be attributed to sorption of inorganic N to biochar. CO2 evolution decreased with 5 t ha−1 biochar but not 25 t ha−1. Biochar addition at 25 t ha−1 changed the CLPP, while the ammonia oxidising bacterial community structure changed only when biochar was added with a N source. Conclusion We conclude that the activity of the microbial community decreased in the presence of biochar, through decreased soil organic matter decomposition and N mineralisation which may have been caused by the decreased MBC.

BACKGROUND AND AIMS: The types of natural forests have long been suggested to shape below-ground microbial communities in forest ecosystem. However, detailed information on the impressionable bacterial groups and the potential mechanisms of these influences are still missing. The present study aims to deepen the current understanding on the soil microbial communities under four typical forest types in Northeast Asia, and to reveal the environmental factors driving the abundance, diversity and composition of soil bacterial communities. METHODS: Four forest types from Changbai Nature Reserve, representing mixed conifer-broadleaf forest and its natural secondary forest, evergreen coniferous forest, and deciduous coniferous forest were selected for this study. Namely, Broadleaf-Korean pine mixed forest (BLKP), secondary Poplar-Birch forest (PB), Spruce-Fir forest (SF), and Larch forest (LA), respectively. Soil bacterial community was analyzed using bar-coded pyrosequencing. Nonmetric multidimensional scaling (NMDS) was used to illustrate the clustering of different samples based on both Bray-Curtis distances and UniFrac distances. The relationship between environmental variables and the overall community structure was analyzed using the Mantel test. RESULTS: The two mixed conifer-broadleaf forests (BLKP and PB) displayed higher total soil nutrients (organic carbon, nitrogen, and phosphorus) and soil pH, but a lower C/N ratio as compared to the two coniferous forests (SF and LA). The mixed conifer-broadleaf forests had higher alpha-diversity and had distinct bacterial communities from the coniferous forests. Soil texture and pH were found as the principle factors for shaping soil bacterial diversity and community composition. The two mixed conifer-broadleaf forests were associated with higher proportion of Acidobacteria, Verrucomicrobia, Bacteroidetes, and Chloroflexi. While the SF and LA forests were dominated by Proteobacteria and Gemmatimonadetes. CONCLUSIONS: Different natural forest type each selects for distinct microbial communities beneath them, with mixed conifer-broadleaf forests being associated with the low-activity bacterial groups, and the coniferous forests being dominated by the so-called high-activity members. The differentiation of soil bacterial communities in natural forests are presumably mediated by the differentiation in terms of soil properties, and could be partially explained by the copiotroph/oligotroph ecological classification model and non-random co-occurrence patterns.

Aims A field experiment was conducted to investigate the effect of biochar on maize yield and greenhouse gases (GHGs) in a calcareous loamy soil poor in organic carbon from Henan, central great plain, China. Methods Biochar was applied at rates of 0, 20 and 40 tha−1 with or without N fertilization. With N fertilization, urea was applied at 300 kg N ha−1, of which 60% was applied as basal fertilizer and 40% as supplementary fertilizer during crop growth. Soil emissions of CO2, CH4 and N2O were monitored using closed chambers at 7 days intervals throughout the whole maize growing season (WMGS). Results Biochar amendments significantly increased maize production but decreased GHGs. Maize yield was increased by 15.8% and 7.3% without N fertilization, and by 8.8% and 12.1% with N fertilization under biochar amendment at 20 tha−1 and 40 tha−1, respectively. Total N2O emission was decreased by 10.7% and by 41.8% under biochar amendment at 20 tha−1 and 40 tha−1 compared to no biochar amendment with N fertilization. The high rate of biochar (40 tha−1) increased the total CO2 emission by 12% without N fertilization. Overall, biochar amendments of 20 tha−1 and 40 tha−1 decreased the total global warming potential (GWP) of CH4 and N2O by 9.8% and by 41.5% without N fertilization, and by 23.8% and 47.6% with N fertilization, respectively. Biochar amendments also decreased soil bulk density and increased soil total N contents but had no effect on soil mineral N. Conclusions These results suggest that application of biochar to calcareous and infertile dry croplands poor in soil organic carbon will enhance crop productivity and reduce GHGs emissions.

There is growing evidence of the importance of extramatrical mycelium (EMM) of mycorrhizal fungi in carbon (C) cycling in ecosystems. However, our understanding has until recently been mainly based on laboratory experiments, and knowledge of such basic parameters as variations in mycelial production, standing biomass and turnover as well as the regulatory mechanisms behind such variations in forest soils is limited. Presently, the production of EMM by ectomycorrhizal (EM) fungi has been estimated at ~140 different forest sites to be up to several hundreds of kg per ha per year, but the published data are biased towards Picea abies in Scandinavia. Little is known about the standing biomass and turnover of EMM in other systems, and its influence on the C stored or lost from soils. Here, focussing on ectomycorrhizas, we discuss the factors that regulate the production and turnover of EMM and its role in soil C dynamics, identifying important gaps in this knowledge. C availability seems to be the key factor determining EMM production and possibly its standing biomass in forests but direct effects of mineral nutrient availability on the EMM can be important. There is great uncertainty about the rate of turnover of EMM. There is increasing evidence that residues of EM fungi play a major role in the formation of stable N and C in SOM, which highlights the need to include mycorrhizal effects in models of global soil C stores.

The loss of organic and inorganic carbon from roots into soil underpins nearly all the major changes that occur in the rhizosphere. In this review we explore the mechanistic basis of organic carbon and nitrogen flow in the rhizosphere. It is clear that C and N flow in the rhizosphere is extremely complex, being highly plant and environment dependent and varying both spatially and temporally along the root. Consequently, the amount and type of rhizodeposits (e.g. exudates, border cells, mucilage) remains highly context specific. This has severely limited our capacity to quantify and model the amount of rhizodeposition in ecosystem processes such as C sequestration and nutrient acquisition. It is now evident that C and N flow at the soil-root interface is bidirectional with C and N being lost from roots and taken up from the soil simultaneously. Here we present four alternative hypotheses to explain why high and low molecular weight organic compounds are actively cycled in the rhizosphere. These include: (1) indirect, fortuitous root exudate recapture as part of the root's C and N distribution network, (2) direct re-uptake to enhance the plant's C efficiency and to reduce rhizosphere microbial growth and pathogen attack, (3) direct uptake to recapture organic nutrients released from soil organic matter, and (4) for inter-root and root-microbial signal exchange. Due to severe flaws in the interpretation of commonly used isotopic labelling techniques, there is still great uncertainty surrounding the importance of these individual fluxes in the rhizosphere. Due to the importance of rhizodeposition in regulating ecosystem functioning, it is critical that future research focuses on resolving the quantitative importance of the different C and N fluxes operating in the rhizosphere and the ways in which these vary spatially and temporally.

Life on Earth is sustained by a small volume of soil surrounding roots, called the rhizosphere. The soil is where most of the biodiversity on Earth exists, and the rhizosphere probably represents the most dynamic habitat on Earth; and certainly is the most important zone in terms of defining the quality and quantity of the Human terrestrial food resource. Despite its central importance to all life, we know very little about rhizosphere functioning, and have an extraordinary ignorance about how best we can manipulate it to our advantage. A major issue in research on rhizosphere processes is the intimate connection between the biology, physics and chemistry of the system which exhibits astonishing spatial and temporal heterogeneities. This review considers the unique biophysical and biogeochemical properties of the rhizosphere and draws some connections between them. Particular emphasis is put on how underlying processes affect rhizosphere ecology, to generate highly heterogeneous microenvironments. Rhizosphere ecology is driven by a combination of the physical architecture of the soil matrix, coupled with the spatial and temporal distribution of rhizodeposits, protons, gases, and the role of roots as sinks for water and nutrients. Consequences for plant growth and whole-system ecology are considered. The first sections address the physical architecture and soil strength of the rhizosphere, drawing their relationship with key functions such as the movement and storage of elements and water as well as the ability of roots to explore the soil and the definition of diverse habitats for soil microorganisms. The distribution of water and its accessibility in the rhizosphere is considered in detail, with a special emphasis on spatial and temporal dynamics and heterogeneities. The physical architecture and water content play a key role in determining the biogeochemical ambience of the rhizosphere, via their effect on partial pressures of O₂ and CO₂, and thereby on redox potential and pH of the rhizosphere, respectively. We address the various mechanisms by which roots and associated microorganisms alter these major drivers of soil biogeochemistry. Finally, we consider the distribution of nutrients, their accessibility in the rhizosphere, and their functional relevance for plant and microbial ecology. Gradients of nutrients in the rhizosphere, and their spatial patterns or temporal dynamics are discussed in the light of current knowledge of rhizosphere biophysics and biogeochemistry. Priorities for future research are identified as well as new methodological developments which might help to advance a comprehensive understanding of the co-occurring processes in the rhizosphere.