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15
result(s) for
"Functional Principal Component Analysis (FPCA)"
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Using functional principal component analysis (FPCA) to quantify sitting patterns derived from wearable sensors
by
LaCroix, Andrea Z.
,
Natarajan, Loki
,
Hartman, Sheri J.
in
Accelerometer
,
Accelerometry - instrumentation
,
Accelerometry - methods
2024
Background
Sedentary behavior (SB) is a recognized risk factor for many chronic diseases. ActiGraph and activPAL are two commonly used wearable accelerometers in SB research. The former measures body movement and the latter measures body posture. The goal of the current study is to quantify the pattern and variation of movement (by ActiGraph activity counts) during activPAL-identified sitting events, and examine associations between patterns and health-related outcomes, such as systolic and diastolic blood pressure (SBP and DBP).
Methods
The current study included 314 overweight postmenopausal women, who were instructed to wear an activPAL (at thigh) and ActiGraph (at waist) simultaneously for 24 hours a day for a week under free-living conditions. ActiGraph and activPAL data were processed to obtain minute-level time-series outputs. Multilevel functional principal component analysis (MFPCA) was applied to minute-level ActiGraph activity counts within activPAL-identified sitting bouts to investigate variation in movement while sitting across subjects and days. The multilevel approach accounted for the nesting of days within subjects.
Results
At least 90% of the overall variation of activity counts was explained by two subject-level principal components (PC) and six day-level PCs, hence dramatically reducing the dimensions from the original minute-level scale. The first subject-level PC captured patterns of fluctuation in movement during sitting, whereas the second subject-level PC delineated variation in movement during different lengths of sitting bouts: shorter (< 30 minutes), medium (30 -39 minutes) or longer (> 39 minute). The first subject-level PC scores showed positive association with DBP (standardized
β
^
: 2.041, standard error: 0.607, adjusted
p
= 0.007), which implied that lower activity counts (during sitting) were associated with higher DBP.
Conclusion
In this work we implemented MFPCA to identify variation in movement patterns during sitting bouts, and showed that these patterns were associated with cardiovascular health. Unlike existing methods, MFPCA does not require pre-specified cut-points to define activity intensity, and thus offers a novel powerful statistical tool to elucidate variation in SB patterns and health.
Trial registration
ClinicalTrials.gov NCT03473145; Registered 22 March 2018;
https://clinicaltrials.gov/ct2/show/NCT03473145
; International Registered Report Identifier (IRRID): DERR1-10.2196/28684
Journal Article
A Classification Method for Multichannel MI-EEG Signal with FPCA and DNN
2024
A new accurate identification method has been proposed to address the lack of interpretability in current deep learning-based feature extraction methods for motor imagery electroencephalogram (MI-EEG) signals. This method combines functional principal component analysis (FPCA) and deep neural networks (DNN) for four classifications of MI-EEG signals. The process involves preprocessing the acquired MI-EEG signals and obtaining power spectral density (PSD) versus frequency curves in the alpha band for multiple channels and samples through FIR filtering. All PSD-frequency curves are then functionally smoothed according to the theory of functional data analysis (FDA). Feature parameters are derived using FPCA, and the parameters of all samples are normalized. Training samples are selected randomly for clustering training with DNNs. Category prediction is carried out on the test data classification samples. This method is applied to 4×120 four-categorized MI-EEG samples, each from six channels obtained from Enobio test, a wireless EEG system from Spain Neuroelectrics, involving left hand, right hand, left foot, and right foot motor imagery at a sampling rate of 500Hz. 80% of the samples were used for training, and the remaining 20% were used for testing. The prediction accuracy ranged from 84.3% to 91.66%. While this multivariate feature parameter extraction method has clear mathematical and physical significance, it does demand a high sampling rate of 500Hz.
Journal Article
Exploring Temporal Patterns of Urban Management Cases Based on Functional Principal Component Data Analysis
by
Liu, Fan
,
Cao, Xinyue
in
Data analysis
,
Decision making
,
functional principal component analysis (FPCA)
2022
This paper indentifies temporal patterns of urban management cases (UMCs) to facilitate relevant administrations finding UMCs from passive to active in a timely and effective way by employing functional principal component analysis (FPCA). Finally, this work obtains temporal patterns of UMCs which are different variability modes of case time series globally, providing practical decision making supports to build up precaution against cases and efficiency quality of related administrations. Furthermore, this work will contribute to the development of Smart City with social harmony greatly. Besides, the study also enriches research in related fields and has a specific academic value.
Journal Article
MULTILEVEL FUNCTIONAL PRINCIPAL COMPONENT ANALYSIS
by
DI, Chong-Zhi
,
CRAINICEANU, Ciprian M
,
CAFFO, Brian S
in
Applications
,
Biology, psychology, social sciences
,
Exact sciences and technology
2009
The Sleep Heart Health Study (SHHS) is a comprehensive landmark study of sleep and its impacts on health outcomes. A primary metric of the SHHS is the in-home polysomnogram, which includes two electroencephalographic (EEG) channels for each subject, at two visits. The volume and importance of this data presents enormous challenges for analysis. To address these challenges, we introduce multilevel functional principal component analysis (MFPCA), a novel statistical methodology designed to extract core intra- and inter-subject geometric components of multilevel functional data. Though motivated by the SHHS, the proposed methodology is generally applicable, with potential relevance to many modern scientific studies of hierarchical or longitudinal functional outcomes. Notably, using MFPCA, we identify and quantify associations between EEG activity during sleep and adverse cardiovascular outcomes.
Journal Article
Prediction of Lithium-Ion Battery Capacity by Functional Principal Component Analysis of Monitoring Data
2022
The lithium-ion (Li-ion) battery is a promising energy storage technology for electronics, automobiles, and smart grids. Extensive research was conducted in the past to improve the prediction of the remaining capacity of the Li-ion battery. A robust prediction model would improve the battery performance and reliability for forthcoming usage. In the development of a data-driven capacity prediction model of Li-ion batteries, most past studies employed capacity degradation data; however, very few tried using other performance monitoring variables, such as temperature, voltage, and current data, to estimate and predict the battery capacity. In this study, we aimed to develop a data-driven model for predicting the capacity of Li-ion batteries adopting functional principal component analysis (fPCA) applied to functional monitoring data of temperature, voltage, and current observations. The proposed method is demonstrated using the battery monitoring data available in the NASA Ames Prognostics Center of Excellence repository. The main contribution of the study the development of an empirical data-driven model to diagnose the state-of-health (SOH) of Li-ion batteries based on the health monitoring data utilizing fPCA and LASSO regression. The study obtained encouraging battery capacity prediction performance by explaining overall variation through eigenfunctions of available monitored discharge parameters of Li-ion batteries. The result of capacity prediction obtained a root mean square error (RMSE) of 0.009. The proposed data-driven approach performs well for predicting the capacity by employing functional performance measures over the life span of a Li-ion battery.
Journal Article
ON THE EVOLUTION OF THE UNITED KINGDOM PRICE DISTRIBUTIONS
2018
We propose a functional principal components method that accounts for stratified random sample weighting and time dependence in the observations to understand the evolution of distributions of monthly micro-level consumer prices for the United Kingdom (UK). We apply the method to publicly available monthly data on individual-good prices collected in retail stores by the UK Office for National Statistics for the construction of the UK Consumer Price Index from March 1996 to September 2015. In addition, we conduct Monte Carlo simulations to demonstrate the effectiveness of our methodology. Our method allows us to visualize the dynamics of the price distribution and uncovers interesting patterns during the sample period. Further, we demonstrate the efficacy of our methodology with an out-of-sample forecasting algorithm which exploits the time dependence of distributions. Our out-of-sample forecasts compares favorably with the random walk forecast.
Journal Article
Modeling spatial–temporal variability of PM2.5 concentrations in Belt and Road Initiative (BRI) region via functional adaptive density approach
by
Hael, Mohanned Abduljabbar
in
Air pollution
,
Aquatic Pollution
,
Atmospheric Protection/Air Quality Control/Air Pollution
2023
The rapid development of the Belt and Road Initiative (BRI) has led to severe air pollution dominated by PM2.5 concentrations which can cause a profound negative impact on human health and economic activity. This problem poses a critical environmental challenge to efficiently handling large-scale spatial–temporal PM2.5 data in this extended region. Functional data analysis (FDA) technique offers powerful tools that have the potential to enhance the analysis of spatial distributions and temporal dynamic changes in high-dimensional pollution data. However, modeling the spatial–temporal variability of PM2.5 concentrations by FDA remains unrevealed in the BRI region. To address this research gap, our study aimed to achieve two main objectives: first, to model the spatial–temporal dynamic variability of PM2.5 in 125 BRI nations (1998–2021), and second, to identify the underlying clusters behind the variations. We employed the recently developed functional adaptive density peak (FADP) clustering approach to solve the current problem. The proposed method is based on the joint use of functional principal components (FPCs) and functional cluster analyses. The main results are as follows: (i) The first three FPCs almost captured 99% of the total variations involving all valuable information on PM2.5 concentrations. (ii) PM2.5 pollution was highly concentrated in the developing countries (Pakistan, Bangladesh, and Nigeria) and the developed countries (Arabian Gulf countries: Qatar, United Arab Emirates, Bahrain, Saudi Arabia, Oman), and the least developed countries (Yemen and Chad). (iii) Three optimal clusters were identified and thus classified the PM2.5 into three distinct degrees of pollution: severe, moderate, and light. (iv) Cluster 1 had a severe pollution effect degree with a high rate of change, and it covered the Arabian Peninsula countries, African countries (Cameroon, Egypt, Gambia, Mali, Mauritania, Nigeria, Sudan, Senegal, Chad), Bangladesh, and Pakistan. (v) About 62 BRI countries belonged to cluster 2 showing a light pollution degree with annul average of less than 20
μ
g
/
m
3
; this pointed out that the PM2.5 concentration remains stable in the cluster 2–related countries. The findings of this research would benefit governments and policymakers in preventing and controlling PM2.5 pollution exposure in BRI. Furthermore, this research could pay attention to sustainable development goals and the vision of the Green BRI policy.
Journal Article
A COMPARISON OF PRE-PROCESSING APPROACHES FOR REMOTELY SENSED TIME SERIES CLASSIFICATION BASED ON FUNCTIONAL ANALYSIS
2023
Satellite remote sensing has gained a key role for vegetation mapping distribution. Given the availability of multi-temporal satellite data, seasonal variations in vegetation dynamics can be used trough time series analysis for vegetation distribution mapping. These types of data have a very high variability within them and are subjected by artifacts. Therefore, a pre-processing phase must be performed to properly detect outliers, for data smoothing process and to correctly interpolate the data. In this work, we compare four pre-processing approaches for functional analysis on 4-years of remotely sensed images, resulting in four time series datasets. The methodologies presented are the results of the combination of two outlier detection methods, namely tsclean and boxplot functions in R and two discrete data smoothing approaches (Generalized Additive Model ”GAM” on daily and aggregated data). The approaches proposed are: tsclean-GAM on aggregated data (M01), boxplot-GAM on aggregated data (M02), tsclean-GAM on daily data (M03), boxplot-GAM on daily data (M04). Our results prove that the approach which involves tsclean function and GAM applied to daily data (M03) is ameliorative to the logic of the procedure and leads to better model performance in terms of Overall Accuracy (OA) which is always among the highest when compared with the others obtained from the other three different approaches.
Journal Article
PRESMOOTHING IN FUNCTIONAL LINEAR REGRESSION
by
Vieu, Philippe
,
González-Manteiga, Wenceslao
,
Ferraty, Frédéric
in
Consistent estimators
,
Eigenvalues
,
Error rates
2012
In this paper, we consider the functional linear model with scalar response, and explanatory variable valued in a function space. In recent literature, functional principal components analysis (FPCA) has been used to estimate the model parameter. We propose to modify this approach by using presmoothing techniques. For this new estimate, consistency is stated and efficiency by comparison with the standard FPCA estimator is studied. We have also analysed the behaviour of our presmoothed estimator by means of a simulation study and data applications.
Journal Article