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Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change.

Here we present the study of meroplankton in Ambon Bay. This study aims to determine the composition and abundance of meroplankton in Ambon Bay. Sixteen stations (eight in the IAB and eight in the OAB) were sampled in March 2022. A plankton sampling was carried out using a plankton net with a mesh size of 300 microns and a diameter of 30 cm drawn at a depth of 10 meters to the surface. The study results showed that the meroplankton in Ambon Bay at the time of observation consisted of fish larvae, fish eggs, Echinodermata larvae, gastropoda larvae,cirripedia larvae, stomatopoda larvae, bracyura larvae (megalopa), bracyura larvae (zoea), nauplius crustacea, sea anemone larvae, other crustacea larvae and annelida larvae. The abundance of meroplankton in the IAB is higher than in the OAB. ANOSIM showed significant differences between IAB and OAB (p <0.05). SIMPER analysis showed that the mean dissimilarity between IAB and OAB was of 56.16%. The meroplankton group was dominated by Echinodermata larvae, which were found to dominate at all research stations, especially in the inner bay of Ambon, with the highest abundance found at station 4, which was 120.31 ind.m −3 .

Our knowledge of the diet of wild octopus paralarvae, Octopus vulgaris, is restricted to the first 2 weeks of its planktonic phase when they are selective hunters found near the coastline. These small paralarvae, bearing only three suckers per arm, are transported by oceanic currents from the coast towards offshore waters, where they complete the planktonic phase over 2 months. Here, we have investigated the trophic ecology of O. vulgaris paralarvae in two contrasting upwelling sub-regions of the Iberian Canary current (ICC) eastern boundary upwelling system and have evaluated dietary change as paralarvae develop (inferred by counting the number of suckers per arm, ranging from three to 15) along the coastal-oceanic gradient during their planktonic phase. Using high-throughput amplicon sequencing, we have characterised the diet of 100 paralarvae collected along the Northwest Iberian Peninsula (n = 65, three to five suckers per arm) and off the west coast of Morocco (n = 35, three to 15 suckers per arm), identifying up to 87 different prey species. The diet of paralarvae varied along the ICC, with crabs (53.4%), siphonophores (12.2%), copepods (12.3%), cnidarians (8.4%) and pteropods (3.7%) accounting for 90% of the variability detected off NW Iberian Peninsula, whereas off W Morocco, crabs (46.2%), copepods (23.1%), cnidarians (12.9%), krill (9.3%) and fishes (4.2%) explained 95.6% of the variability observed using frequency of observance (FOO%) data. Ontogenetic changes in the diet based on groups of paralarvae with similar numbers per arm were evidenced by the decreasing contribution of coastal meroplankton and an increase in oceanic holoplankton, including siphonophores, copepods, pteropods and krill. Trophic niche breadth values ranged from 0.06 to 0.67, with averaged values ranging from 0.23 to 0.33 (generalist = 1 and specialist = 0), suggesting that O. vulgaris paralarvae are selective predators through their ontogenetic transition between coastal and oceanic environments.

Benthic organisms typically possess a planktonic propagule stage in the form of larvae or spores, which enables them to spread over large distances before settlement, and promotes tight pelago-benthic coupling. However, factors driving dispersal and epibenthos recruitment in shallow hard-bottom Arctic communities are poorly known. We therefore conducted a year-round in situ colonization experiment in Isfjorden (Svalbard), and found out that variation in early-stage epibenthic assemblages was explained by the combination of: abiotic (45.9%) and biotic variables (23.9%), and their interactions (30.2%). The upward-facing experimental plates were dominated by coralline algae, and this is the first study showing that at high latitudes coralline algae Lithothamnion sp. settle in high numbers on available substrates during the polar night in winter. The downward-facing plates, which had much less exposure to light, contained more diverse organisms, with a predominance of polychaetas and bryozoans. However, in summer, the barnacle Semibalanus balanoides outcompeted all the other recruits, as a result of massive occurrence of meroplanktonic Cirripedia larvae, triggered by the phytoplankton bloom. In conclusion, the rate and success of epibenthic settlements were dependent mostly on light availability and temperature, suggesting that larval settlement will be impacted by global warming with some taxa benefitting, while others losing.

Globally, marine heatwave frequency, intensity, and duration are on the rise, posing a significant threat to plankton communities, the foundational elements of the marine food web. This study investigates the ecological and physiological responses of a temperate plankton community in the Thau lagoon, north-western Mediterranean, to a simulated +3°C ten-day heatwave followed by a ten-day post-heatwave period in in-situ mesocosms. Our analyses encompassed zooplankton grazing, production, community composition in water and sediment traps, as well as oxidative stress and anti-oxidant biomarkers. The results revealed increased abundances of harpacticoid copepods and polychaete larvae during the simulated heatwave and post-heatwave event. Sediment trap data indicated elevated mortality, particularly dominated by polychaete larvae during the post-heatwave period. Oxidative stress biomarker (lipid peroxidation LPX) levels in the plankton community correlated with temperature, signaling cellular damage during the heatwave. LPX increased and proteins decreased with increasing salinity during the experiment. Offspring production peaked during the post-heatwave phase. Notably, the calanoid copepod Acartia clausi exhibited a preference for ciliates as its primary prey, constituting 20% of the overall available prey. Our findings suggest a potential shift in coastal zooplankton communities during future marine heatwaves, transitioning from calanoid mesozooplankton dominance to a system featuring meroplankton and/or harpacticoid copepods. Although species preying on microzooplankton may gain advantages in such conditions, the study underscores the damaging impact of heatwaves on organismal lipids, with potential consequences for reproduction, growth, and survival within marine ecosystems.

Unusually warm conditions recently observed in the Pacific Arctic region included a dramatic loss of sea ice cover and an enhanced inflow of warmer Pacific-derived waters. Moored sediment traps deployed at three biological hotspots of the Distributed Biological Observatory (DBO) during this anomalously warm period collected sinking particles nearly continuously from June 2017 to July 2019 in the northern Bering Sea (DBO2) and in the southern Chukchi Sea (DBO3), and from August 2018 to July 2019 in the northern Chukchi Sea (DBO4). Fluxes of living algal cells, chlorophyll a (chl a ), total particulate matter (TPM), particulate organic carbon (POC), and zooplankton fecal pellets, along with zooplankton and meroplankton collected in the traps, were used to evaluate spatial and temporal variations in the development and composition of the phytoplankton and zooplankton communities in relation to sea ice cover and water temperature. The unprecedented sea ice loss of 2018 in the northern Bering Sea led to the export of a large bloom dominated by the exclusively pelagic diatoms Chaetoceros spp. at DBO2. Despite this intense bloom, early sea ice breakup resulted in shorter periods of enhanced chl a and diatom fluxes at all DBO sites, suggesting a weaker biological pump under reduced ice cover in the Pacific Arctic region, while the coincident increase or decrease in TPM and POC fluxes likely reflected variations in resuspension events. Meanwhile, the highest transport of warm Pacific waters during 2017–2018 led to a dominance of the small copepods Pseudocalanus at all sites. Whereas the export of ice-associated diatoms during 2019 suggested a return to more typical conditions in the northern Bering Sea, the impact on copepods persisted under the continuously enhanced transport of warm Pacific waters. Regardless, the biological pump remained strong on the shallow Pacific Arctic shelves.

Abundance and diversity of meroplankton (larvae of benthos and nekton, including eggs) in the Nusalaut coastal waters were investigated. The research was conducted in two months (May 2009; April 2014). The abundance of meroplankton was collected from NORPAC net (0.33 mm, mesh size) by vertical hauling from 10 meters of deep to the surface. The samples were taken in 8 stations and repeated in April 2014. All samples were preserved with 4% formaldehyde and analyzed using microscope. In May 2009, total abundance of meroplankton varied between 84 ind.m−3 and 780 ind.m−3, but mainly fluctuated around 300-500 ind.m−3. Larvae of 13 taxa were identified. Fish eggs represented the most predominant taxa (average abundance 96 ind.m−3), followed by echinodermata larvae (81 ind.m−3). Meanwhile, in April 2014 total abundance was lower. During this period, the total abundance varied between 8 ind.m−3 and 48 ind.m−3. Larvae of 7 taxa were found. Echinodermata larvae represented the most predominat taxa (average abundance 6 ind.m−3), followed by gastropoda larvae (5 ind.m−3). It is suggested that spawning season occurred during May, indicated from the high value of total abundance of meroplankton.

The zooplankton of five estuaries of the Basque coast (southeast Bay of Biscay) was surveyed in summer 2019 to check the intraregional spread of exotic species and analyse the cross-estuary differences in brackish and neritic communities related to the arrival of exotic species and the summertime geographic gradient of water temperature. Results revealed that all the studied estuaries have been colonized by Oithona davisae but not by Acartia tonsa and Pseudodiaptomus marinus. Environmental constraints due to estuarine hydrological features partly explained such differences, and the role of secondary spread opportunities remained less clear. Cross-estuary differences in the brackish community mainly reflected changes in the dominance of the native species Acartia bifilosa relative to different exotic copepod species. The neritic holoplankton differed in the contribution of thermophilic species in agreement with the thermal west–east increase of surface water temperature in the inner Bay of Biscay in summer. The detection of large numbers of larvae of the exotic crab Rhithropanopeus harrisii only in one of the estuaries highlighted the role of exotic benthic species in enhancing intraregional differences in estuarine meroplankton. Differences in the dominance of neritic or brackish species as a function of salinity and distance from coastline were also explored.

Planktonic larvae of spionid polychaetes are among the most common and abundant group in coastal meroplankton worldwide. The present study reports the morphology of spionid larvae collected mainly from coastal waters of northeastern Japan that were identified by the comparison of adult and larval 18S and 16S rRNA gene sequences. The molecular analysis effectively discriminated the species. Adult sequences of 48 species from 14 genera ( Aonides Claparède, 1864; Boccardia Carazzi, 1893; Boccardiella Blake & Kudenov, 1978; Dipolydora Verrill, 1881; Laonice Malmgren, 1867; Malacoceros Quatrefages, 1843; Paraprionospio Caullery, 1914; Polydora Bosc, 1802; Prionospio Malmgren, 1867; Pseudopolydora Czerniavsky, 1881; Rhynchospio Hartman, 1936; Scolelepis Blainville, 1828; Spio Fabricius, 1785; Spiophanes Grube, 1860) and larval sequences of 41 species from 14 genera ( Aonides ; Boccardia ; Boccardiella ; Dipolydora ; Laonice ; Paraprionospio ; Poecilochaetus Claparède in Ehlers, 1875; Polydora ; Prionospio ; Pseudopolydora ; Rhynchospio ; Scolelepis ; Spio ; Spiophanes ) of spionid polychaetes were obtained; sequences of 27 of these species matched between adults and larvae. Morphology of the larvae was generally species‐specific, and larvae from the same genus mostly shared morphological features, with some exceptions. Color and number of eyes, overall body shape, and type and arrangement of pigmentation are the most obvious differences between genera or species. The morphological information on spionid larvae provided in this study contributes to species or genus level larval identification of this taxon in the studied area. Identification keys to genera and species of planktonic spionid larvae in northeastern Japan are provided. The preliminary results of the molecular phylogeny of the family Spionidae using 18S and 16S rRNA gene regions are also provided.

After its bloom in the Black and Caspian Sea in the late 1980s and early 90s, there has been an increased interest in understanding the ecology of the invasive zooplanktivorous comb jellyfish Mnemiopsis leidyi and its potentially severe impacts on the functioning of marine systems. In the last decade, M. leidyi has colonized most of the Mediterranean Sea, including the Adriatic Sea, and in 2016 it was recorded in the Venice Lagoon (Malej et al. J Sea Res 124:10–16, 2017). The impact M. leidyi could have on a semi-enclosed ecosystem like the Venice Lagoon is of concern as it is an important nursery and foraging area for several fish species as well as an area of mussel, clam, and crab fishery and aquaculture. Historically, the feeding preference of M. leidyi was determined by morphological identification of gut contents. This is the first study investigating the in-situ gut contents of this species using DNA metabarcoding, which overcomes the limit in identifying partially digested prey. In this study, M. leidyi’s gut contents collected in the Venice Lagoon were evaluated by metabarcoding and compared to the in-situ mesozooplankton community. The results indicate that its blooming period is in the late summer and that it feeds on a variety of prey, mostly coinciding with the zooplankton assemblage. Notably, some groups, like decapod larvae and the slow-swimming larvae of gastropods and bivalves, appear to be favored. Conversely, the relative abundance of copepods was higher in-situ than in the gut contents.