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"Recording sessions"
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Surface EMG-Based Inter-Session Gesture Recognition Enhanced by Deep Domain Adaptation
2017
High-density surface electromyography (HD-sEMG) is to record muscles’ electrical activity from a restricted area of the skin by using two dimensional arrays of closely spaced electrodes. This technique allows the analysis and modelling of sEMG signals in both the temporal and spatial domains, leading to new possibilities for studying next-generation muscle-computer interfaces (MCIs). sEMG-based gesture recognition has usually been investigated in an intra-session scenario, and the absence of a standard benchmark database limits the use of HD-sEMG in real-world MCI. To address these problems, we present a benchmark database of HD-sEMG recordings of hand gestures performed by 23 participants, based on an 8 × 16 electrode array, and propose a deep-learning-based domain adaptation framework to enhance sEMG-based inter-session gesture recognition. Experiments on NinaPro, CSL-HDEMG and our CapgMyo dataset validate that our approach outperforms state-of-the-arts methods on intra-session and effectively improved inter-session gesture recognition.
Journal Article
Mysterious ultraslow brain activity observed in mice
2024
[...]populations of (presumably) excitatory neurons in the MEC of awake mice in the dark exhibit slow sequences of activity that repeat every 40-200 seconds, and often tens of times during recording sessions of 30 or 60 minutes. The phase (or the response time relative to the period) of a given neuron in a sequence tended to remain the same throughout a recording session. [...]building on numerical simulations, the authors speculate that the slow sequences might serve as templates for neuronal sequences in other brain areas that receive input from the MEC.
Journal Article
Neural timescales reflect behavioral demands in freely moving rhesus macaques
by
Maisson, David J.-N.
,
Hayden, Benjamin
,
Manea, Ana M. G.
in
631/378/2649/1409
,
631/378/3920
,
9/30
2024
Previous work demonstrated a highly reproducible cortical hierarchy of neural timescales at rest, with sensory areas displaying fast, and higher-order association areas displaying slower timescales. The question arises how such stable hierarchies give rise to adaptive behavior that requires flexible adjustment of temporal coding and integration demands. Potentially, this lack of variability in the hierarchical organization of neural timescales could reflect the structure of the laboratory contexts. We posit that unconstrained paradigms are ideal to test whether the dynamics of neural timescales reflect behavioral demands. Here we measured timescales of local field potential activity while male rhesus macaques foraged in an open space. We found a hierarchy of neural timescales that differs from previous work. Importantly, although the magnitude of neural timescales expanded with task engagement, the brain areas’ relative position in the hierarchy was stable. Next, we demonstrated that the change in neural timescales is dynamic and contains functionally-relevant information, differentiating between similar events in terms of motor demands and associated reward. Finally, we demonstrated that brain areas are differentially affected by these behavioral demands. These results demonstrate that while the space of neural timescales is anatomically constrained, the observed hierarchical organization and magnitude is dependent on behavioral demands.
The functional relevance of neural timescales is not fully understood. Here the authors demonstrate that neural timescales change with behavioral demands in freely moving macaques.
Journal Article
A roadmap for survey designs in terrestrial acoustic monitoring
by
Sugai, Larissa Sayuri Moreira
,
Silva, Thiago Sanna Freire
,
Llusia, Diego
in
Acoustic monitoring
,
acoustic recorders
,
Acoustic surveying
2020
Passive acoustic monitoring (PAM) is increasingly popular in ecological research and conservation programs, with high‐volume and long‐term data collection provided by automatized acoustic sensors offering unprecedented opportunities for faunal and ecosystem surveys. Practitioners and newcomers interested in PAM can easily find technical specifications for acoustic sensors and microphones, but guidelines on how to plan survey designs are largely scattered over the literature. Here, we (i) review spatial and temporal sampling designs used in passive acoustic monitoring, (ii) provide a synthesis of the crucial aspects of PAM survey design and (iii) propose a workflow to optimize recording autonomy and recording schedules. From 1992 to 2018, most of the 460 studies applying PAM in terrestrial environments have used a single recorder per site, covered broad spatial scales and rotated recorders between sites to optimize sampling effort. Continuous recording of specific diel periods was the main recording procedure used. When recording schedules were applied, a larger number of recordings per hour was generally associated with a smaller recording length. For PAM survey design, we proposed to (i) estimate memory/battery autonomy and associated costs, (ii) assess signal detectability to optimize recording schedules in order to recover maximum biological information and (iii) evaluate cost‐benefit scenarios between sampling effort and budget to address potential biases from a given PAM survey design. Establishing standards for PAM data collection will improve the quality of inferences over the broad scope of PAM research and promote essential standardization for cross‐scale research to understand long‐term biodiversity trends in a changing world. We review and synthesise main aspects of spatial and temporal designs used in passive acoustic monitoring applied to ecological research. To promote integrative and cross‐scale research, we compile cautionary suggestions to plan survey designs while accounting for species detectability and workable budget. These procedures support optimising research in the broad scope of applications with acoustic monitoring.
Journal Article
Towards the interpretability of deep learning models for multi-modal neuroimaging: Finding structural changes of the ageing brain
by
Witte, A. Veronica
,
Lapuschkin, Sebastian
,
Müller, Klaus-Robert
in
Ageing
,
Aging
,
Alzheimer's disease
2022
Brain-age (BA) estimates based on deep learning are increasingly used as neuroimaging biomarker for brain health; however, the underlying neural features have remained unclear. We combined ensembles of convolutional neural networks with Layer-wise Relevance Propagation (LRP) to detect which brain features contribute to BA. Trained on magnetic resonance imaging (MRI) data of a population-based study (n = 2637, 18–82 years), our models estimated age accurately based on single and multiple modalities, regionally restricted and whole-brain images (mean absolute errors 3.37–3.86 years). We find that BA estimates capture ageing at both small and large-scale changes, revealing gross enlargements of ventricles and subarachnoid spaces, as well as white matter lesions, and atrophies that appear throughout the brain. Divergence from expected ageing reflected cardiovascular risk factors and accelerated ageing was more pronounced in the frontal lobe. Applying LRP, our study demonstrates how superior deep learning models detect brain-ageing in healthy and at-risk individuals throughout adulthood.
Journal Article
Cortical astrocytes independently regulate sleep depth and duration via separate GPCR pathways
2021
Non-rapid eye movement (NREM) sleep, characterized by slow-wave electrophysiological activity, underlies several critical functions, including learning and memory. However, NREM sleep is heterogeneous, varying in duration, depth, and spatially across the cortex. While these NREM sleep features are thought to be largely independently regulated, there is also evidence that they are mechanistically coupled. To investigate how cortical NREM sleep features are controlled, we examined the astrocytic network, comprising a cortex-wide syncytium that influences population-level neuronal activity. We quantified endogenous astrocyte activity in mice over natural sleep and wake, then manipulated specific astrocytic G-protein-coupled receptor (GPCR) signaling pathways in vivo. We find that astrocytic Gi- and Gq-coupled GPCR signaling separately control NREM sleep depth and duration, respectively, and that astrocytic signaling causes differential changes in local and remote cortex. These data support a model in which the cortical astrocyte network serves as a hub for regulating distinct NREM sleep features. Sleep has many roles, from strengthening new memories to regulating mood and appetite. While we might instinctively think of sleep as a uniform state of reduced brain activity, the reality is more complex. First, over the course of the night, we cycle between a number of different sleep stages, which reflect different levels of sleep depth. Second, the amount of sleep depth is not necessarily even across the brain but can vary between regions. These sleep stages consist of either rapid eye movement (REM) sleep or non-REM (NREM) sleep. REM sleep is when most dreaming occurs, whereas NREM sleep is particularly important for learning and memory and can vary in duration and depth. During NREM sleep, large groups of neurons synchronize their firing to create rhythmic waves of activity known as slow waves. The more synchronous the activity, the deeper the sleep. Vaidyanathan et al. now show that brain cells called astrocytes help regulate NREM sleep. Astrocytes are not neurons but belong to a group of specialized cells called glia. They are the largest glia cell type in the brain and display an array of proteins on their surfaces called G-protein-coupled receptors (GPCRs). These enable them to sense sleep-wake signals from other parts of the brain and to generate their own signals. In fact, each astrocyte can communicate with thousands of neurons at once. They are therefore well-poised to coordinate brain activity during NREM sleep. Using innovative tools, Vaidyanathan et al. visualized astrocyte activity in mice as the animals woke up or fell asleep. The results showed that astrocytes change their activity just before each sleep–wake transition. They also revealed that astrocytes control both the depth and duration of NREM sleep via two different types of GPCR signals. Increasing one of these signals (Gi-GPCR) made the mice sleep more deeply but did not change sleep duration. Decreasing the other (Gq-GPCR) made the mice sleep for longer but did not affect sleep depth. Sleep problems affect many people at some point in their lives, and often co-exist with other conditions such as mental health disorders. Understanding how the brain regulates different features of sleep could help us develop better – and perhaps more specific – treatments for sleep disorders. The current study suggests that manipulating GPCRs on astrocytes might increase sleep depth, for example. But before work to test this idea can begin, we must first determine whether findings from sleeping mice also apply to people.
Journal Article
Human hippocampal and entorhinal neurons encode the temporal structure of experience
2024
Extracting the underlying temporal structure of experience is a fundamental aspect of learning and memory that allows us to predict what is likely to happen next. Current knowledge about the neural underpinnings of this cognitive process in humans stems from functional neuroimaging research
1
–
5
. As these methods lack direct access to the neuronal level, it remains unknown how this process is computed by neurons in the human brain. Here we record from single neurons in individuals who have been implanted with intracranial electrodes for clinical reasons, and show that human hippocampal and entorhinal neurons gradually modify their activity to encode the temporal structure of a complex image presentation sequence. This representation was formed rapidly, without providing specific instructions to the participants, and persisted when the prescribed experience was no longer present. Furthermore, the structure recovered from the population activity of hippocampal–entorhinal neurons closely resembled the structural graph defining the sequence, but at the same time, also reflected the probability of upcoming stimuli. Finally, learning of the sequence graph was related to spontaneous, time-compressed replay of individual neurons’ activity corresponding to previously experienced graph trajectories. These findings demonstrate that neurons in the hippocampus and entorhinal cortex integrate the ‘what’ and ‘when’ information to extract durable and predictive representations of the temporal structure of human experience.
Single-neuron recordings from intracranial electrodes inserted into human brains for clinical reasons suggest that the temporal structure of human experience is encoded in human hippocampal and entorhinal neurons.
Journal Article
Exploring MEG brain fingerprints: Evaluation, pitfalls, and interpretations
by
Ville, Dimitri Van De
,
Gupta, Anubha
,
Zahar, Sélima
in
Attention
,
Brain fingerprinting
,
Brain mapping
2021
Individual characterization of subjects based on their functional connectome (FC), termed “FC fingerprinting”, has become a highly sought-after goal in contemporary neuroscience research. Recent functional magnetic resonance imaging (fMRI) studies have demonstrated unique characterization and accurate identification of individuals as an accomplished task. However, FC fingerprinting in magnetoencephalography (MEG) data is still widely unexplored. Here, we study resting-state MEG data from the Human Connectome Project to assess the MEG FC fingerprinting and its relationship with several factors including amplitude- and phase-coupling functional connectivity measures, spatial leakage correction, frequency bands, and behavioral significance. To this end, we first employ two identification scoring methods, differential identifiability and success rate, to provide quantitative fingerprint scores for each FC measurement. Secondly, we explore the edgewise and nodal MEG fingerprinting patterns across the different frequency bands (delta, theta, alpha, beta, and gamma). Finally, we investigate the cross-modality fingerprinting patterns obtained from MEG and fMRI recordings from the same subjects. We assess the behavioral significance of FC across connectivity measures and imaging modalities using partial least square correlation analyses. Our results suggest that fingerprinting performance is heavily dependent on the functional connectivity measure, frequency band, identification scoring method, and spatial leakage correction. We report higher MEG fingerprinting performances in phase-coupling methods, central frequency bands (alpha and beta), and in the visual, frontoparietal, dorsal-attention, and default-mode networks. Furthermore, cross-modality comparisons reveal a certain degree of spatial concordance in fingerprinting patterns between the MEG and fMRI data, especially in the visual system. Finally, the multivariate correlation analyses show that MEG connectomes have strong behavioral significance, which however depends on the considered connectivity measure and temporal scale. This comprehensive, albeit preliminary investigation of MEG connectome test-retest identifiability offers a first characterization of MEG fingerprinting in relation to different methodological and electrophysiological factors and contributes to the understanding of fingerprinting cross-modal relationships. We hope that this first investigation will contribute to setting the grounds for MEG connectome identification.
Journal Article
Parvalbumin-positive interneurons mediate neocortical-hippocampal interactions that are necessary for memory consolidation
by
Takehara-Nishiuchi, Kaori
,
Tran, Matthew M
,
Frankland, Paul W
in
Action Potentials
,
Alzheimer's disease
,
Animals
2017
Following learning, increased coupling between spindle oscillations in the medial prefrontal cortex (mPFC) and ripple oscillations in the hippocampus is thought to underlie memory consolidation. However, whether learning-induced increases in ripple-spindle coupling are necessary for successful memory consolidation has not been tested directly. In order to decouple ripple-spindle oscillations, here we chemogenetically inhibited parvalbumin-positive (PV+) interneurons, since their activity is important for regulating the timing of spiking activity during oscillations. We found that contextual fear conditioning increased ripple-spindle coupling in mice. However, inhibition of PV+ cells in either CA1 or mPFC eliminated this learning-induced increase in ripple-spindle coupling without affecting ripple or spindle incidence. Consistent with the hypothesized importance of ripple-spindle coupling in memory consolidation, post-training inhibition of PV+ cells disrupted contextual fear memory consolidation. These results indicate that successful memory consolidation requires coherent hippocampal-neocortical communication mediated by PV+ cells. Sleep contributes to the strengthening of memories. During non-dreaming sleep, neurons in regions of the brain that form and store memories – such as the hippocampus and prefrontal cortex – fire in rhythmic waves. The neurons in the hippocampus tend to fire during a wave that repeats up to 250 times per second, called sharp-wave ripples. Meanwhile, in the prefrontal cortex, the neurons tend to fire during a lower frequency wave that repeats 12 to 15 times per second, called spindles. During sleep and quiet wakefulness, hippocampal ripples often synchronize with prefrontal spindles; that is, both waves tend to occur at approximately the same time. Many neuroscientists think this allows the brain regions to better communicate with one another, which in turn should help the brain to strengthen memories. Consistent with this possibility, rodents that learn a new task show more synchrony between ripples and spindles afterwards. But no one had actually tested whether this increase in ripple-spindle synchrony does strengthen the rodent’s memory of the task. It was also unclear how the brain achieves such an increase. Xia et al. suspected that this process involved a group of inhibitory brain cells called parvalbumin-positive interneurons. These cells act like timekeepers, and help to synchronize the firing of groups of neurons. Xia et al. now show that training mice to associate an environment with a mild electric shock made it more likely that the animals would show ripple-spindle synchrony. Yet, inhibiting the activity of parvalbumin-positive interneurons in either the hippocampus or prefrontal cortex blocked this effect. It also prevented sleep from strengthening the animals’ memory of the link between the environment and the shock. Patients with Alzheimer’s disease have fewer parvalbumin-positive interneurons. By showing that these neurons help strengthen new memories, these findings may explain why losing them can impair memory. Restoring or replacing interneuron activity could be a promising therapeutic avenue to explore.
Journal Article
Dopamine reward prediction errors reflect hidden-state inference across time
by
Babayan, Benedicte M
,
Starkweather, Clara Kwon
,
Uchida, Naoshige
in
631/378/116/2396
,
631/378/1788
,
9/97
2017
A long-standing idea in modern neuroscience is that the brain computes inferences about the outside world rather than passively observing its environment. The authors record from midbrain dopamine neurons during tasks with different reward contingencies and show that responses are consistent with a learning rule that harnesses hidden-state inference.
Midbrain dopamine neurons signal reward prediction error (RPE), or actual minus expected reward. The temporal difference (TD) learning model has been a cornerstone in understanding how dopamine RPEs could drive associative learning. Classically, TD learning imparts value to features that serially track elapsed time relative to observable stimuli. In the real world, however, sensory stimuli provide ambiguous information about the hidden state of the environment, leading to the proposal that TD learning might instead compute a value signal based on an inferred distribution of hidden states (a 'belief state'). Here we asked whether dopaminergic signaling supports a TD learning framework that operates over hidden states. We found that dopamine signaling showed a notable difference between two tasks that differed only with respect to whether reward was delivered in a deterministic manner. Our results favor an associative learning rule that combines cached values with hidden-state inference.
Journal Article