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21
result(s) for
"SNIC"
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Object-Oriented LULC Classification in Google Earth Engine Combining SNIC, GLCM, and Machine Learning Algorithms
2020
Google Earth Engine (GEE) is a versatile cloud platform in which pixel-based (PB) and object-oriented (OO) Land Use–Land Cover (LULC) classification approaches can be implemented, thanks to the availability of the many state-of-art functions comprising various Machine Learning (ML) algorithms. OO approaches, including both object segmentation and object textural analysis, are still not common in the GEE environment, probably due to the difficulties existing in concatenating the proper functions, and in tuning the various parameters to overcome the GEE computational limits. In this context, this work is aimed at developing and testing an OO classification approach combining the Simple Non-Iterative Clustering (SNIC) algorithm to identify spatial clusters, the Gray-Level Co-occurrence Matrix (GLCM) to calculate cluster textural indices, and two ML algorithms (Random Forest (RF) or Support Vector Machine (SVM)) to perform the final classification. A Principal Components Analysis (PCA) is applied to the main seven GLCM indices to synthesize in one band the textural information used for the OO classification. The proposed approach is implemented in a user-friendly, freely available GEE code useful to perform the OO classification, tuning various parameters (e.g., choose the input bands, select the classification algorithm, test various segmentation scales) and compare it with a PB approach. The accuracy of OO and PB classifications can be assessed both visually and through two confusion matrices that can be used to calculate the relevant statistics (producer’s, user’s, overall accuracy (OA)). The proposed methodology was broadly tested in a 154 km2 study area, located in the Lake Trasimeno area (central Italy), using Landsat 8 (L8), Sentinel 2 (S2), and PlanetScope (PS) data. The area was selected considering its complex LULC mosaic mainly composed of artificial surfaces, annual and permanent crops, small lakes, and wooded areas. In the study area, the various tests produced interesting results on the different datasets (OA: PB RF (L8 = 72.7%, S2 = 82%, PS = 74.2), PB SVM (L8 = 79.1%, S2 = 80.2%, PS = 74.8%), OO RF (L8 = 64%, S2 = 89.3%, PS = 77.9), OO SVM (L8 = 70.4, S2 = 86.9%, PS = 73.9)). The broad code application demonstrated very good reliability of the whole process, even though the OO classification process resulted, sometimes, too demanding on higher resolution data, considering the available computational GEE resources.
Journal Article
Developmental function and state transitions of a gene expression oscillator in Caenorhabditis elegans
by
Meeuse, Milou WM
,
Eglinger, Jan
,
Hauser, Yannick P
in
bifurcation
,
Bifurcations
,
Caenorhabditis elegans
2020
Gene expression oscillators can structure biological events temporally and spatially. Different biological functions benefit from distinct oscillator properties. Thus, finite developmental processes rely on oscillators that start and stop at specific times, a poorly understood behavior. Here, we have characterized a massive gene expression oscillator comprising > 3,700 genes in
Caenorhabditis elegans
larvae. We report that oscillations initiate in embryos, arrest transiently after hatching and in response to perturbation, and cease in adults. Experimental observation of the transitions between oscillatory and non‐oscillatory states at high temporal resolution reveals an oscillator operating near a Saddle Node on Invariant Cycle (SNIC) bifurcation. These findings constrain the architecture and mathematical models that can represent this oscillator. They also reveal that oscillator arrests occur reproducibly in a specific phase. Since we find oscillations to be coupled to developmental processes, including molting, this characteristic of SNIC bifurcations endows the oscillator with the potential to halt larval development at defined intervals, and thereby execute a developmental checkpoint function.
Synopsis
The authors investigate a putative developmental clock in
C. elegans
. Population‐ and single animal‐based analyses uncover a gene expression oscillator that may support a developmental checkpoint function.
Extensive rhythmic gene expression in
C. elegans
larvae is initiated in embryos and is coupled to molting.
The oscillator is arrested in a specific phase (normally observed at molt exit) in adults, early L1 and dauer larvae.
A bifurcation of the oscillator constitutes a putative developmental checkpoint mechanism.
Characteristics of oscillation onset and offset constrain potential oscillator mechanisms as well as mathematical models and their parameters.
Graphical Abstract
The authors investigate a putative developmental clock in
C. elegans
. Population‐ and single animal‐based analyses uncover a gene expression oscillator that may support a developmental checkpoint function.
Journal Article
PlanetScope, Sentinel-2, and Sentinel-1 Data Integration for Object-Based Land Cover Classification in Google Earth Engine
2022
PlanetScope (PL) high-resolution composite base maps have recently become available within Google Earth Engine (GEE) for the tropical regions thanks to the partnership between Google and the Norway’s International Climate and Forest Initiative (NICFI). Object-based (OB) image classification in the GEE environment has increased rapidly due to the broadly recognized advantages of applying these approaches to medium- and high-resolution images. This work aimed to assess the advantages for land cover classification of (a) adopting an OB approach with PL data; and (b) integrating the PL datasets with Sentinel 2 and Sentinel 1 data both in Pixel-based (PB) or OB approaches. For this purpose, in this research, we compared ten LULC classification approaches (PB and OB, all based on the Random Forest (RF) algorithm), where the three satellite datasets were used according to different levels of integration and combination. The study area, which is 69,272 km2 wide and located in central Brazil, was selected within the tropical region, considering a preliminary availability of sample points and its complex landscape mosaic composed of heterogeneous agri-natural spaces, including scattered settlements. Using only the PL dataset with a typical RF PB approach produced the worse overall accuracy (OA) results (67%), whereas adopting an OB approach for the same dataset yielded very good OA (82%). The integration of PL data with the S2 and S1 datasets improved both PB and OB overall accuracy outputs (82 vs. 67% and 91 vs. 82%, respectively). Moreover, this research demonstrated the OB approaches’ applicability in GEE, even in vast study areas and using high-resolution imagery. Although additional applications are necessary, the proposed methodology appears to be very promising for properly exploiting the potential of PL data in GEE.
Journal Article
Pixel- vs. Object-Based Landsat 8 Data Classification in Google Earth Engine Using Random Forest: The Case Study of Maiella National Park
2021
With the general objective of producing a 2018–2020 Land Use/Land Cover (LULC) map of the Maiella National Park (central Italy), useful for a future long-term LULC change analysis, this research aimed to develop a Landsat 8 (L8) data composition and classification process using Google Earth Engine (GEE). In this process, we compared two pixel-based (PB) and two object-based (OB) approaches, assessing the advantages of integrating the textural information in the PB approach. Moreover, we tested the possibility of using the L8 panchromatic band to improve the segmentation step and the object’s textural analysis of the OB approach and produce a 15-m resolution LULC map. After selecting the best time window of the year to compose the base data cube, we applied a cloud-filtering and a topography-correction process on the 32 available L8 surface reflectance images. On this basis, we calculated five spectral indices, some of them on an interannual basis, to account for vegetation seasonality. We added an elevation, an aspect, a slope layer, and the 2018 CORINE Land Cover classification layer to improve the available information. We applied the Gray-Level Co-Occurrence Matrix (GLCM) algorithm to calculate the image’s textural information and, in the OB approaches, the Simple Non-Iterative Clustering (SNIC) algorithm for the image segmentation step. We performed an initial RF optimization process finding the optimal number of decision trees through out-of-bag error analysis. We randomly distributed 1200 ground truth points and used 70% to train the RF classifier and 30% for the validation phase. This subdivision was randomly and recursively redefined to evaluate the performance of the tested approaches more robustly. The OB approaches performed better than the PB ones when using the 15 m L8 panchromatic band, while the addition of textural information did not improve the PB approach. Using the panchromatic band within an OB approach, we produced a detailed, 15-m resolution LULC map of the study area.
Journal Article
Object-Oriented Crop Classification Using Time Series Sentinel Images from Google Earth Engine
2023
The resulting maps of land use classification obtained by pixel-based methods often have salt-and-pepper noise, which usually shows a certain degree of cluttered distribution of classification image elements within the region. This paper carries out a study on crop classification and identification based on time series Sentinel images and object-oriented methods and takes the crop recognition and classification of the National Modern Agricultural Industrial Park in Jalaid Banner, Inner Mongolia, as the research object. It uses the Google Earth Engine (GEE) cloud platform to extract time series Sentinel satellite radar and optical remote sensing images combined with simple noniterative clustering (SNIC) multiscale segmentation with random forest (RF) and support vector machine (SVM) classification algorithms to classify and identify major regional crops based on radar and spectral features. Compared with the pixel-based method, the combination of SNIC multiscale segmentation and random forest classification based on time series radar and optical remote sensing images can effectively reduce the salt-and-pepper phenomenon in classification and improve crop classification accuracy with the highest accuracy of 98.66 and a kappa coefficient of 0.9823. This study provides a reference for large-scale crop identification and classification work.
Journal Article
Crop classification in Google Earth Engine: leveraging Sentinel-1, Sentinel-2, European CAP data, and object-based machine-learning approaches
2025
In contemporary agriculture and environmental management, the need for precise and accurate crop maps has never been more vital. Although object-based (OB) methods within Google Earth Engine (GEE) improve accuracy and output quality in contrast to pixel-based approaches, their application to crop classification remains relatively rare. Therefore, this study aimed to develop an OB classification methodology for crops located in central Italy's Lake Trasimeno area. This methodology employed spectral bands, spectral indices (Normalized Difference Vegetation Index and Modified Radar Vegetation Index), and textural information (Gray-Level Co-occurrence Matrix) derived from Sentinel-2 L2A (S2) and Sentinel-1 GRD (S1) data within the GEE platform. Moreover, European Common Agricultural Policy (CAP) data associated with cadastral parcels were employed and served as ground information during the training and validation stages. The CAP crop classes were aggregated into three levels (Level 1-3 crop types, Level 2-5 crop types, and Level 3-7 crop types). Subsequently, optimized Random Forest (RF) classifiers were applied to map crops effectively. Feature selection analysis highlighted the importance of certain textural features. Additionally, findings demonstrated high overall accuracy results (89% for Level 1, 86% for Level 2, and 82% for Level 3). It was found that winter crops achieved the highest F-score at Level 1, while specific subclasses, such as winter cereals and warm-season cereals, excelled at Level 2. Overall, this study provides a promising approach for improved crop mapping and precision agriculture in the GEE environment.
Journal Article
Automatic Rice Early-Season Mapping Based on Simple Non-Iterative Clustering and Multi-Source Remote Sensing Images
by
Ge, Xiaosan
,
Chen, Riqiang
,
Wang, Laigang
in
Accuracy
,
Agricultural research
,
Artificial intelligence
2024
Timely and accurate rice spatial distribution maps play a vital role in food security and social stability. Early-season rice mapping is of great significance for yield estimation, crop insurance, and national food policymaking. Taking Tongjiang City in Heilongjiang Province with strong spatial heterogeneity as study area, a hierarchical K-Means binary automatic rice classification method based on phenological feature optimization (PFO-HKMAR) is proposed, using Google Earth Engine platform and Sentinel-1/2, and Landsat 7/8 data. First, a SAR backscattering intensity time series is reconstructed and used to construct and optimize polarization characteristics. A new SAR index named VH-sum is built, which is defined as the summation of VH backscattering intensity for specific time periods based on the temporal changes in VH polarization characteristics of different land cover types. Then comes feature selection, optimization, and reconstruction of optical data. Finally, the PFO-HKMAR classification method is established based on Simple Non-Iterative Clustering. PFO-HKMAR can achieve early-season rice mapping one month before harvest, with overall accuracy, Kappa, and F1 score reaching 0.9114, 0.8240 and 0.9120, respectively (F1 score is greater than 0.9). Compared with the two crop distribution datasets in Northeast China and ARM-SARFS, overall accuracy, Kappa, and F1 scores of PFO-HKMAR are improved by 0.0507–0.1957, 0.1029–0.3945, and 0.0611–0.1791, respectively. The results show that PFO-HKMAR can be promoted in Northeast China to enable early-season rice mapping, and provide valuable and timely information to different stakeholders and decision makers.
Journal Article
Regional Forest Wildfire Mapping Through Integration of Sentinel-2 and Landsat 8 Data in Google Earth Engine with Semi-Automatic Training Sample Generation
2025
Accurate mapping of burned forest areas in mountainous regions is essential for wildfire assessment and post-fire ecological management. This study develops an FS-SNIC-ML workflow that integrates multi-source optical fusion, semi-automatic sample generation, feature selection, and object-based machine-learning classification to support reliable burned-area mapping under complex terrain conditions. A pseudo-invariant feature (PIFS)-based fusion of Sentinel-2 and Landsat 8 imagery was employed to generate cloud-free, gap-free, and spectrally consistent pre- and post-fire reflectance datasets. Burned and unburned samples were constructed using a semi-automatic SAM–GLCM–PCA–Otsu procedure and county-level stratified sampling to ensure spatial representa-tiveness. Feature selection using LR, RF, and Boruta identified dNBR, dNDVI, and dEVI as the most discriminative variables. Within the SNIC-supported GEOBIA framework, four classifiers were evaluated; RF performed best, achieving overall accuracies of 92.02% for burned areas and 94.04% for unburned areas, outperforming SVM, CART, and KNN. K-means clustering of dNBR revealed spatial variation in fire conditions, while geographical detector analysis showed that NDVI, temperature, soil moisture, and their pairwise interactions were the dominant drivers of wildfire hotspot density. The proposed workflow provides an effective and transferable approach for high-precision burned-area extraction and quantification of wildfire-driving factors in mountainous forest regions.
Journal Article
Extending the UTAUT2 Model with a Privacy Calculus Model to Enhance the Adoption of a Health Information Application in Malaysia
by
Murad, Masrah Azrifah Azmi
,
Liu, Jigang
,
Bile Hassan, Ismail
in
Behavior
,
Blood groups
,
Calculus
2022
This study validates and extends the latest unified theory of acceptance and use of technology (UTAUT2) with the privacy calculus model. To evaluate the adoption of healthcare and e-government applications, researchers have recommended—in previous literature—the application of technology adoption models with privacy, trust, and security-related constructs. However, the current UTAUT2 model lacks privacy, trust, and security-related constructs. Therefore, the proposed UTAUT2 with the privacy calculus model is incorporated into four constructs: privacy concern, perceived risk, trust in the smart national identity card (SNIC), and perceived credibility. Results from a survey data of 720 respondents show that habit, effort expectancy, performance expectancy, social influence, hedonic motivation, and price value are direct determinants that influence behavioral intentions to use. Results also revealed that behavioral intentions, facilitating conditions, habits, perceived risks, and privacy concerns are direct predictors of ‘use behavior’. The authors also analyzed the interrelationships among the research constructs. The extended model may lead toward establishing better innovative e-health services to cover the desires of the citizens through the use of health information applications embedded in an all-in-one card.
Journal Article
Comparing WorldView-2 and PlanetScope Imagery to Mapping Housing Types Using GEOBIA
2023
The mapping accuracy of housing types plays a vital role in urban planning and development. Choosing the right imagery for urban geospatial analysis matters in terms of spatial or textural resolution. Here we compare the effectiveness of different satellite imagery, namely WorldView-2 (2m resolution) and PlanetScope (3m resolution) to map housing types. The segmentation algorithm employed is SNIC (Simple Non-Iterative Clustering) while SVM (Support Vector Machine) algorithm is for classification. This study assessed the performance of these satellite platforms in capturing to extract spatial and spectral elements of each housing class and differentiating between urban villages (Kampung Kota), government-based housing, and private-based gated housing classes in the Tangerang area. WorldView-2, with its high spatial resolution, provides detailed information, allowing for precise delineation of housing boundaries and distinctive features, whereas Planetscope imagery offers better textural information for the segmentation stage. Despite the coarser details, the SVM classification algorithm achieved an overall accuracy of 65.00% using PlanetScope imagery. Comparative analysis revealed that WorldView-2 imagery outperformed PlanetScope imagery in terms of overall accuracy, with an overall accuracy of 65.52%. The higher spatial resolution of WorldView-2 enables better discrimination of housing types, resulting in more accurate classification. However, PlanetScope imagery provides valuable information, particularly for large-scale urban planning applications. The findings of this study contribute to the field of remote sensing and assist urban planners in making informed decisions regarding housing development and infrastructure planning based on available satellite imagery resources, both of which have their own advantages and disadvantages.
Journal Article