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"cryogenic-specimen electron microscopy"
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Community recommendations on cryoEM data archiving and validation
by
Rosenthal, Peter B.
,
Topf, Maya
,
Schroeder, Gunnar F.
in
Archives & records
,
Archiving
,
Bioinformatics
2024
In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.
Journal Article
Localization of sucrose synthase and callose in freeze-substituted secondary-wall-stage cotton fibers
by
Seagull, Robert W.
,
Haigler, Candace H.
,
Salnikov, Vadim V.
in
carbohydrate metabolism
,
Cell Wall - chemistry
,
Cell Wall - ultrastructure
2003
Methods for cryogenic fixation, freeze substitution, and embedding were developed to preserve the cellular structure and protein localization of secondary-wall-stage cotton (Gossypium hirsutum L.) fibers accurately for the first time. Perturbation by specimen handling was minimized by freezing fibers still attached to a seed fragment within 2 min after removal of seeds from a boll still attached to the plant. These methods revealed native ultrastructure, including numerous active Golgi bodies, multivesicular bodies, and proplastids. Immunolocalization in the context of accurate structure was accomplished after freeze substitution in acetone only. Quantitation of immunolabeling identified sucrose synthase both near the cortical microtubules and plasma membrane and in a proximal exoplasmic zone about 0.2 microm thick. Immunolabeling also showed that callose (beta-1,3-glucan) was codistributed with sucrose synthase within this exoplasmic zone. Similar results were obtained from cultured cotton fibers. The distribution of sucrose synthase is consistent with its having a dual role in cellulose and callose synthesis in secondary-wall-stage cotton fibers.
Journal Article