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57 result(s) for "generalized dissimilarity modelling"
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Predicting the success of an invader: Niche shift versus niche conservatism
Invasive species can encounter environments different from their source populations, which may trigger rapid adaptive changes after introduction (niche shift hypothesis). To test this hypothesis, we investigated whether postintroduction evolution is correlated with contrasting environmental conditions between the European invasive and source ranges in the Asian tiger mosquito Aedes albopictus. The comparison of environmental niches occupied in European and source population ranges revealed more than 96% overlap between invasive and source niches, supporting niche conservatism. However, we found evidence for postintroduction genetic evolution by reanalyzing a published ddRADseq genomic dataset from 90 European invasive populations using genotype–environment association (GEA) methods and generalized dissimilarity modeling (GDM). Three loci, among which a putative heat-shock protein, exhibited significant allelic turnover along the gradient of winter precipitation that could be associated with ongoing range expansion. Wing morphometric traits weakly correlated with environmental gradients within Europe, but wing size differed between invasive and source populations located in different climatic areas. Niche similarities between source and invasive ranges might have facilitated the establishment of populations. Nonetheless, we found evidence for environmental-induced adaptive changes after introduction. The ability to rapidly evolve observed in invasive populations (genetic shift) together with a large proportion of unfilled potential suitable areas (80%) pave the way to further spread of Ae. albopictus in Europe.
Similar compositional turnover but distinct insular environmental and geographical drivers of native and exotic ants in two oceans
Aim This study aims to quantify the patterns in compositional turnover of native and exotic ants on small islands in two oceans, and to explore whether such patterns are driven by similar environmental, geographical and potentially biotic variables. Location Pacific and Atlantic islands. Time period Present. Major taxa studied Ants. Methods We applied Multi‐Site Generalised Dissimilarity Modelling (MS‐GDM), which relates zeta diversity, the number of species shared by a given number of islands, to differences in environmental, geographical and biotic drivers. The use of zeta diversity enabled us to differentiate the contribution of rare species (shared by few islands) from those of widespread ones (shared by multiple islands) to compositional turnover. For completion, we also related species richness of insular ants per island with the same set of explanatory variables using Generalised Additive Models (GAM). Results Pacific and Atlantic islands have similar patterns of ant species turnover and richness, albeit partly driven by different drivers. Native and exotic species turnover are mostly explained by the same set of variables in the Pacific (annual precipitation and distance to the nearest island), but not in the Atlantic (annual precipitation is a good predictor of native species turnover, but none of the variables considered in our study explained exotic species turnover). No signal of biotic interactions was detected at the insular community level. Main conclusions Successful invasion strategies may depend on a combination of factors specific to the region in question. In the Pacific, milder environments and the absence of natives on certain islands enable exotic ants to select the same types of environment as native ants. In the harsher Atlantic Ocean, however, native ant species are likely to be well adapted to local environmental conditions, making it harder for exotics to become established. Exotic ant species, therefore, potentially rely on other attributes to establish, such as a combination of tolerance to a wide range of environmental conditions and human‐mediated colonization.
Precipitation and vegetation shape patterns of genomic and craniometric variation in the central African rodent Praomys misonnei
Predicting species' capacity to respond to climate change is an essential first step in developing effective conservation strategies. However, conservation prioritization schemes rarely take evolutionary potential into account. Ecotones provide important opportunities for diversifying selection and may thus constitute reservoirs of standing variation, increasing the capacity for future adaptation. Here, we map patterns of environmentally associated genomic and craniometric variation in the central African rodent Praomys misonnei to identify areas with the greatest turnover in genomic composition. We also project patterns of environmentally associated genomic variation under future climate change scenarios to determine where populations may be under the greatest pressure to adapt. While precipitation gradients influence both genomic and craniometric variation, vegetation structure is also an important determinant of craniometric variation. Areas of elevated environmentally associated genomic and craniometric variation overlap with zones of rapid ecological transition underlining their importance as reservoirs of evolutionary potential. We also find that populations in the Sanaga river basin, central Cameroon and coastal Gabon are likely to be under the greatest pressure from climate change. Lastly, we make specific conservation recommendations on how to protect zones of high evolutionary potential and identify areas where populations may be the most susceptible to climate change.
Space can substitute for time in predicting climate-change effects on biodiversity
“Space-for-time” substitution is widely used in biodiversity modeling to infer past or future trajectories of ecological systems from contemporary spatial patterns. However, the foundational assumption—that drivers of spatial gradients of species composition also drive temporal changes in diversity—rarely is tested. Here, we empirically test the space-for-time assumption by constructing orthogonal datasets of compositional turnover of plant taxa and climatic dissimilarity through time and across space from Late Quaternary pollen records in eastern North America, then modeling climate-driven compositional turnover. Predictions relying on space-for-time substitution were ∼72% as accurate as “time-for-time” predictions. However, space-for-time substitution performed poorly during the Holocene when temporal variation in climate was small relative to spatial variation and required subsampling to match the extent of spatial and temporal climatic gradients. Despite this caution, our results generally support the judicious use of space-for-time substitution in modeling community responses to climate change.
Environmental and historical imprints on beta diversity: insights from variation in rates of species turnover along gradients
A common approach for analysing geographical variation in biodiversity involves using linear models to determine the rate at which species similarity declines with geographical or environmental distance and comparing this rate among regions, taxa or communities. Implicit in this approach are weakly justified assumptions that the rate of species turnover remains constant along gradients and that this rate can therefore serve as a means to compare ecological systems. We use generalized dissimilarity modelling, a novel method that accommodates variation in rates of species turnover along gradients and between different gradients, to compare environmental and spatial controls on the floras of two regions with contrasting evolutionary and climatic histories: southwest Australia and northern Europe. We find stronger signals of climate history in the northern European flora and demonstrate that variation in rates of species turnover is persistent across regions, taxa and different gradients. Such variation may represent an important but often overlooked component of biodiversity that complicates comparisons of distance–decay relationships and underscores the importance of using methods that accommodate the curvilinear relationships expected when modelling beta diversity. Determining how rates of species turnover vary along and between gradients is relevant to understanding the sensitivity of ecological systems to environmental change.
Predicting beta diversity of terrestrial and aquatic beetles using ecogeographical variables
Aim We examined the responses of the beta diversity of aquatic and terrestrial beetles to ecogeographical variables, including climate, land cover and land use, across Northern Europe. Location Northern Europe (Denmark, Sweden, Norway and Finland). Methods Information on the occurrence of ground beetles and diving beetles across Northern European biogeographical provinces was collated from literature sources. Beta diversity was examined using Jaccard dissimilarity coefficient as well as its replacement and richness difference components. Each of the three dissimilarity matrices (responses) was modelled using various ecogeographical variables (predictors) by generalized dissimilarity modelling (GDM). Results The magnitude of total beta diversity was relatively similar between ground beetles and diving beetles, but the richness difference component contributed more than the replacement component to total beta diversity in ground beetles, whereas the opposite was true for diving beetles. The predictor variables most influential in GDM in accounting for spatial variation in beta diversity varied between the two beetle groups as well as between the replacement and richness difference components. In general, the richness difference component of ground beetles responded strongly to latitude and associated climatic variables, whereas the replacement component of diving beetles varied strongly along the same geographical gradient. Main conclusions Our findings suggest that the study of the determinants of biodiversity patterns benefits from the partitioning of beta diversity into different components and from comparing terrestrial and aquatic groups. For example, our findings suggest that the strong climatic and land use‐related gradients in beta diversity have important implications for predicting and mitigating the effect of ongoing global change on the composition of regional biotas.
Source pools and disharmony of the world's island floras
Island disharmony refers to the biased representation of higher taxa on islands compared to their mainland source regions and represents a central concept in island biology. Here, we develop a generalizable framework for approximating these source regions and conduct the first global assessment of island disharmony and its underlying drivers. We compiled vascular plant species lists for 178 oceanic islands and 735 mainland regions. Using mainland data only, we modelled species turnover as a function of environmental and geographic distance and predicted the proportion of shared species between each island and mainland region. We then quantified the over‐ or under‐representation of families on individual islands (representational disharmony) by contrasting the observed number of species against a null model of random colonization from the mainland source pool, and analysed the effects of six family‐level functional traits on the resulting measure. Furthermore, we aggregated the values of representational disharmony per island to characterize overall taxonomic bias of a given flora (compositional disharmony), and analysed this second measure as a function of four island biogeographical variables. Our results indicate considerable variation in representational disharmony both within and among plant families. Examples of generally over‐represented families include Urticaceae, Convolvulaceae and almost all pteridophyte families. Other families such as Asteraceae and Orchidaceae were generally under‐represented, with local peaks of over‐representation in known radiation hotspots. Abiotic pollination and a lack of dispersal specialization were most strongly associated with an insular over‐representation of families, whereas other family‐level traits showed minor effects. With respect to compositional disharmony, large, high‐elevation islands tended to have the most disharmonic floras. Our results provide important insights into the taxon‐ and island‐specific drivers of disharmony. The proposed framework allows overcoming the limitations of previous approaches and provides a quantitative basis for incorporating functional and phylogenetic approaches into future studies of island disharmony.
Dissecting global turnover in vascular plants
Aim: To provide a global assessment of turnover in vascular plants across geographical settings and taxonomic and functional groups. We tested whether turnover and its spatial and environmental drivers are affected by the geographical setting and whether taxonomic and functional groups exhibit specific turnover patterns that are associated with their ecological characteristics. Location: Global. Methods: We collated a global dataset of vascular plant checklists comprising 258 island and 346 mainland units. We created subsets based on the geographical setting of study units (mainland, islands, different island types) as well as taxonomic and functional properties of species (angiosperms, gymnosperms, pteridophytes, trees, shrubs, herbs). For the entire dataset, and each subset, the distance decay of similarity was assessed using generalized linear models. To disentangle the relative importance of spatial and environmental drivers of turnover, we employed generalized dissimilarity models. Finally, the model results were used to predict compositional similarity of vascular plants across a global grid. Results: The distance decay of similarity was stronger for mainland units than for islands. Among taxonomic and functional groups, the rate of decay was lowest for pteridophytes and highest for shrubs. Partitioning of turnover into distance-and environment-related effects revealed fundamental differences between mainland and island systems, with geographical distance being more important on the mainland than on islands. This trend was consistent across taxonomic and functional groups. Main conclusions: Our results reveal an important role of geographical context in shaping beta-diversity patterns. We argue that geographical settings are characterized by specific configurations of ecological filters that have a strong impact on the magnitude and structure of turnover. Moreover, taxonomic and functional groups are differentially successful in passing these filters, resulting in group-and setting-specific turnover patterns. Exploring these interdependences for different taxa and geographical settings at different scales will help to improve our understanding of beta diversity.
Contrasting drivers of diversity in hosts and parasites across the tropical Andes
Geographic turnover in community composition is created and maintained by eco-evolutionary forces that limit the ranges of species. One such force may be antagonistic interactions among hosts and parasites, but its general importance is unknown. Understanding the processes that underpin turnover requires distinguishing the contributions of key abiotic and biotic drivers over a range of spatial and temporal scales. Here, we address these challenges using flexible, nonlinear models to identify the factors that underlie richness (alpha diversity) and turnover (beta diversity) patterns of interacting host and parasite communities in a global biodiversity hot spot. We sampled 18 communities in the Peruvian Andes, encompassing ∼1,350 bird species and ∼400 hemosporidian parasite lineages, and spanning broad ranges of elevation, climate, primary productivity, and species richness. Turnover in both parasite and host communities was most strongly predicted by variation in precipitation, but secondary predictors differed between parasites and hosts, and between contemporary and phylogenetic timescales. Host communities shaped parasite diversity patterns, but there was little evidence for reciprocal effects. The results for parasite communities contradicted the prevailing view that biotic interactions filter communities at local scales while environmental filtering and dispersal barriers shape regional communities. Rather, subtle differences in precipitation had strong, fine-scale effects on parasite turnover while host–community effects only manifested at broad scales. We used these models to map bird and parasite turnover onto the ecological gradients of the Andean landscape, illustrating beta-diversity hot spots and their mechanistic underpinnings.
Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment
Generalized dissimilarity modelling (GDM) is a statistical technique for analysing and predicting spatial patterns of turnover in community composition (beta diversity) across large regions. The approach is an extension of matrix regression, designed specifically to accommodate two types of nonlinearity commonly encountered in large-scaled ecological data sets: (1) the curvilinear relationship between increasing ecological distance, and observed compositional dissimilarity, between sites; and (2) the variation in the rate of compositional turnover at different positions along environmental gradients. GDM can be further adapted to accommodate special types of biological and environmental data including, for example, information on phylogenetic relationships between species and information on barriers to dispersal between geographical locations. The approach can be applied to a wide range of assessment activities including visualization of spatial patterns in community composition, constrained environmental classification, distributional modelling of species or community types, survey gap analysis, conservation assessment, and climate-change impact assessment.