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Habitat mapping data are increasingly being recognised for their importance in underpinning marine spatial planning. The ability to collect ultra-high resolution (cm) multibeam echosounder (MBES) data in shallow waters has facilitated understanding of the fine-scale distribution of benthic habitats in these areas that are often prone to human disturbance. Developing quantitative and objective approaches to integrate MBES data with ground observations for predictive modelling is essential for ensuring repeatability and providing confidence measures for habitat mapping products. Whilst supervised classification approaches are becoming more common, users are often faced with a decision whether to implement a pixel based (PB) or an object based (OB) image analysis approach, with often limited understanding of the potential influence of that decision on final map products and relative importance of data inputs to patterns observed. In this study, we apply an ensemble learning approach capable of integrating PB and OB Image Analysis from ultra-high resolution MBES bathymetry and backscatter data for mapping benthic habitats in Refuge Cove, a temperate coastal embayment in south-east Australia. We demonstrate the relative importance of PB and OB seafloor derivatives for the five broad benthic habitats that dominate the site. We found that OB and PB approaches performed well with differences in classification accuracy but not discernible statistically. However, a model incorporating elements of both approaches proved to be significantly more accurate than OB or PB methods alone and demonstrate the benefits of using MBES bathymetry and backscatter combined for class discrimination.

The ocean floor, its species and habitats are under pressure from various human activities. Marine spatial planning and nature conservation aim to address these threats but require sufficiently detailed and accurate maps of the distribution of seabed substrates and habitats. Benthic habitat mapping has markedly evolved as a discipline over the last decade, but important challenges remain. To test the adequacy of current data products and classification approaches, we carried out a comparative study based on a common dataset of multibeam echosounder bathymetry and backscatter data, supplemented with groundtruth observations. The task was to predict the spatial distribution of five substrate classes (coarse sediments, mixed sediments, mud, sand, and rock) in a highly heterogeneous area of the south-western continental shelf of the United Kingdom. Five different supervised classification methods were employed, and their accuracy estimated with a set of samples that were withheld. We found that all methods achieved overall accuracies of around 50%. Errors of commission and omission were acceptable for rocky substrates, but high for all sediment types. We predominantly attribute the low map accuracy regardless of mapping approach to inadequacies of the selected classification system, which is required to fit gradually changing substrate types into a rigid scheme, low discriminatory power of the available predictors, and high spatial complexity of the site relative to the positioning accuracy of the groundtruth equipment. Some of these issues might be alleviated by creating an ensemble map that aggregates the individual outputs into one map showing the modal substrate class and its associated confidence or by adopting a quantitative approach that models the spatial distribution of sediment fractions. We conclude that further incremental improvements to the collection, processing and analysis of remote sensing and sample data are required to improve map accuracy. To assess the progress in benthic habitat mapping we propose the creation of benchmark datasets.

This paper presents an assessment of the quality of selected filtration methods for the postprocessing of multibeam echosounder data. In this regard, the methodology used in the quality assessment of these data is an important factor. One of the most important final products derived from bathymetric data is the digital bottom model (DBM). Therefore, quality assessment is often based on factors related to it. In this paper, we propose some quantitative and qualitative factors to perform these assessments, and we analyze a few selected filtration methods as examples. This research makes use of real data gathered in real environments, preprocessed with typical hydrographic flow. The methods presented in this paper may be used in empirical solutions, and the filtration analysis may be useful for hydrographers choosing a filtration method for DBM interpolation. The results showed that both data-oriented and surface-oriented methods can be used in data filtration and that various evaluation methods show different perspectives on data filtration quality assessment.

Acoustic seafloor measurements with multibeam echosounders (MBESs) are currently often used for submarine habitat mapping, but the MBESs are usually not acoustically calibrated for backscattering strength (BBS) and cannot be used to infer absolute seafloor angular dependence. We present a study outlining the calibration and showing absolute backscattering strength values measured at a frequency of 150 kHz at around 10–20 m water depth. After recording bathymetry, the co-registered backscattering strength was corrected for true incidence and footprint reverberation area on a rough and tilted seafloor. Finally, absolute backscattering strength angular response curves (ARCs) for several seafloor types were constructed after applying sonar backscattering strength calibration and specific water column absorption for 150 kHz correction. Thus, we inferred specific 150 kHz angular backscattering responses that can discriminate among very fine sand, sandy gravel, and gravelly sand, as well as between bare boulders and boulders partially overgrown by red algae, which was validated by video ground-truthing. In addition, we provide backscatter mosaics using our algorithm (BBS-Coder) to correct the angle varying gain (AVG). The results of the work are compared and discussed with the published results of BBS measurements in the 100–400 kHz frequency range. The presented results are valuable in extending the very sparse angular response curves gathered so far and could contribute to a better understanding of the dependence of backscattering on the type of bottom habitat and improve their acoustic classification.

Recently, the rapid development of the seabed mapping industry has allowed researchers to collect hydroacoustic data in shallow, nearshore environments. Progress in marine habitat mapping has also helped to distinguish the seafloor areas of varied acoustic properties. As a result of these new developments, we have collected a multi-frequency, multibeam echosounder dataset from the valuable nearshore environment of the southern Baltic Sea using two frequencies: 150 kHz and 400 kHz. Despite its small size, the Rowy area is characterized by diverse habitat conditions and the presence of red algae, unique on the Polish coast of the Baltic Sea. This study focused on the utilization of multibeam bathymetry and multi-frequency backscatter data to create reliable maps of the seafloor. Our approach consisted of the extraction of 70 secondary features of bathymetric and backscatter data, including statistic and textural attributes of different scales. Based on ground-truth samples, we have identified six habitat classes and selected the most relevant features of the bathymetric and backscatter data. Additionally, five types of image processing pixel-based and object-based classifiers were tested. We also evaluated the performance of algorithms using an accuracy assessment based on the validation subset of the ground-truth samples. Our best results reached 93% overall accuracy and a kappa coefficient of 0.90, confirming that nearshore seabed habitats can be accurately distinguished based on multi-frequency, multibeam echosounder measurements. Our predictive habitat mapping of shallow euphotic zones creates a new scientific perspective and provides relevant data for the management of natural resources. Object-based approaches previously used in various environments and areas suggest that methodology presented in this study may be scalable.

In this work, multibeam echosounder (MBES) and dual frequency sidescan sonar (SSS) data are combined to map the shallow (5–100 m) benthic habitats of the National Marine Park of Zakynthos (NMPZ), Greece, a Marine Protected Area (MPA). NMPZ hosts extensive prairies of the protected Mediterranean phanerogams Posidonia oceanica and Cymodocea nodosa, as well as reefs and sandbanks. Seafloor characterization is achieved using the multi-frequency acoustic backscatter of: (a) the two simultaneous frequencies of the SSS (100 and 400 kHz) and (b) the MBES (180 kHz), as well as the MBES bathymetry. Overall, these high-resolution datasets cover an area of 84 km2 with ground coverage varying from 50% to 100%. Image texture, terrain and backscatter angular response analyses are applied to the above, to extract a range of statistical features. Those have different spatial densities and so they are combined through an object-based approach based on the full-coverage 100-kHz SSS mosaic. Supervised classification is applied to data models composed of operationally meaningful combinations between the above features, reflecting single-sonar or multi-sonar mapping scenarios. Classification results are validated against a detailed expert interpretation habitat map making use of extensive ground-truth data. The relative gain of one system or one feature extraction method or another are thoroughly examined. The frequency-dependent separation of benthic habitats showcases the potentials of multi-frequency backscatter and bathymetry from different sonars, improving evidence-based interpretations of shallow benthic habitats.

Multibeam echosounders are widely used for 3D bathymetric mapping, and increasingly for water column studies. However, they rapidly collect huge volumes of data, which poses a challenge for water column data processing that is often still manual and time-consuming, or affected by low efficiency and high false detection rates if automated. This research describes a comprehensive and reproducible workflow that improves efficiency and reliability of target detection and classification, by calculating metrics for target cross-sections using a commercial software before feeding into a feature-based semi-supervised machine learning framework. The method is tested with data collected from an uncalibrated multibeam echosounder around an offshore gas platform in the Adriatic Sea. It resulted in more-efficient target detection, and, although uncertainties regarding user labelled training data need to be underlined, an accuracy of 98% in target classification was reached by using a final pre-trained stacking ensemble model.

The condition of the Indonesian territory surrounded by the ocean requires technology to obtain seabed information to support the development of social, economic, and security activities. One of the technologies that can be used is the multibeam echosounder (MBES) hydroacoustic technology. MBES can scan seabed in a wide range, resulting in bathymetric data and backscatter values. The value of backscatter can be used to identify seafloor sediments. This study compared backscatter intensity values obtained from the MBES survey to the previous study. After identifying the sediment, the data obtained are mapped to produce a sediment distribution map. The types of sediment identified in the Damar Besar Island Waters are fine silt, medium silt, coarsed silt, silty sand, muddy sand, clayed sand, very fine sand, and fine sand with a range of backscatter values from -34,92 to -19,04 dB. Fine sand sediments are nearby the northern island while muddy sands and silty sands are scattered away from the island.

The establishment of multibeam echosounders (MBES) as a mainstream tool in ocean mapping has facilitated integrative approaches towards nautical charting, benthic habitat mapping, and seafloor geotechnical surveys. The bathymetric and backscatter information generated by MBES enables marine scientists to present highly accurate bathymetric data with a spatial resolution closely matching that of terrestrial mapping, and can generate customized thematic seafloor maps to meet multiple ocean management needs. However, when a variety of MBES systems are used, the creation of objective habitat maps can be hindered by the lack of backscatter calibration, due for example, to system-specific settings, yielding relative rather than absolute values. Here, we describe an approach using object-based image analysis to combine 4 non-overlapping and uncalibrated (backscatter) MBES coverages to form a seamless habitat map on St. Anns Bank (Atlantic Canada), a marine protected area hosting a diversity of benthic habitats. The benthoscape map was produced by analysing each coverage independently with supervised classification (k-nearest neighbor) of image-objects based on a common suite of 7 benthoscapes (determined with 4214 ground-truthing photographs at 61 stations, and characterized with backscatter, bathymetry, and bathymetric position index). Manual re-classification based on uncertainty in membership values to individual classes—especially at the boundaries between coverages—was used to build the final benthoscape map. Given the costs and scarcity of MBES surveys in offshore marine ecosystems—particularly in large ecosystems in need of adequate conservation strategies, such as in Canadian waters—developing approaches to synthesize multiple datasets to meet management needs is warranted.

Multibeam echosounders provide ideal data for the semi-automated seabed feature extraction and accurate morphometric measurements. In this study, bathymetric and raw backscatter data were initially used to manually delimit the reef morphologies found in an insular semi-enclosed gulf in the northern Aegean Sea (Gera Gulf, Lesvos Island, Greece). The complexity of this environment makes it an ideal area to “crash test” (test to the limit) and compare the results of the delineation methods. A large number of (more than 7000) small but prominent reefs were detected, which made manual mapping extremely time-consuming. Three semi-automated tools were also employed to map the reefs: the Benthic Terrain Modeler (BTM), Confined Morphologies Mapping (CoMMa), and eCognition Multiresolution Segmentation. BTM did not function properly with irregular reef footprints, but by modifying both the bathymetry and slope, the outcome was improved, producing accurate results that appeared to exceed the accuracy of manual mapping. CoMMa, a new GIS morphometric toolbox, was a “one-stop shop” that, besides generating satisfactory reef delineation results (i.e., detecting the same total reef area as the manual method), was also used to extract the morphometric characteristics of the polygons resulting from all the methods. Lastly, the Multiresolution Segmentation also gave satisfactory results with the highest precision. To compare the final maps with the distribution of the reefs, mapcurves were created to estimate the goodness-of-fit (GOF) with the Precision, Recall, and F1 Scores producing values higher than 0.78, suggesting a good detection accuracy for the semi-automated methods. The analysis reveals that the semi-automated methods provided more efficient results in comparison with the time-consuming manual mapping. Overall, for this case study, the modification of the bathymetry and slope enabled the results’ accuracy to be further enhanced. This study asserts that the use of semi-automated mapping is an effective method for delineating the geomorphometry of intricate relief and serves as a powerful tool for habitat mapping and decision-making.