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Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana

by Geralt, Michael , Guzman, Plinio , Ansari, Yasser , Shinn, Paul , Stevenson, Denise K. , Karnes, Meagan , Parker, Holly , Crosby, William L. , Alonso, José M. , Marchand, Trudy , Koesema, Eric , Carter, David E. , Zimmerman, Justin , Barajas, Pascual , Chen, Huaming , Hazari, Nisha , Leisse, Thomas J. , Deen, Hashim , Heller, Collen , Mulholland, Celene , Schmidt, Ian , Cheuk, Rosa , Meyers, Cristina C. , Ndubaku, Ral , Schmid, Markus , Kim, Christopher J. , Brogden, Debra , Ecker, Joseph R. , Choy, Nathan , Risseeuw, Eddy , Stepanova, Anna N. , Aguilar-Henonin, Laura , Zeko, Albana , Hom, Emily , Prednis, Lance , Weigel, Detlef , Berry, Charles C. , Jeske, Albert , Gadrinab, Carmelita

in 3' Untranslated Regions / 5' Untranslated Regions / Agrobacterium radiobacter / Alleles / Arabidopsis - genetics / Arabidopsis - metabolism / Arabidopsis Proteins - genetics / Arabidopsis Proteins - metabolism / Arabidopsis thaliana / Base Composition / Biological and medical sciences / Chromosomes / Chromosomes, Plant - genetics / Coding / Correlation / Deoxyribonucleic acid / DNA / DNA, Bacterial - genetics / DNA, Plant - chemistry / DNA, Plant - genetics / Ethylenes - pharmacology / Exons / Expressed Sequence Tags / Flowers & plants / Fundamental and applied biological sciences. Psychology / Gene Expression / Gene Expression Profiling / Gene Expression Regulation, Plant - drug effects / Genes / Genes, Plant / Genes. Genome / Genetic mutation / Genome, Plant / Genomes / Genomics / Hormones / insertional mutagenesis / intergenic DNA / Introns / Molecular and cellular biology / Molecular genetics / Mutagenesis, Insertional / Mutation / Neurons / Neuroscience / Oligonucleotide Array Sequence Analysis / Plants / promoter regions / Promoter Regions, Genetic / Recombination, Genetic / Rhizobium - genetics / transfer DNA / Yeasts

2003

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2003

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2003

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Journal Article

Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana

Geralt, Michael,

Guzman, Plinio,

Ansari, Yasser,

Shinn, Paul,

Stevenson, Denise K.,

Karnes, Meagan,

Parker, Holly,

Crosby, William L.,

Alonso, José M.,

Marchand, Trudy,

Koesema, Eric,

Carter, David E.,

Zimmerman, Justin,

Barajas, Pascual,

Chen, Huaming,

Hazari, Nisha,

Leisse, Thomas J.,

Deen, Hashim,

Heller, Collen,

Mulholland, Celene,

Schmidt, Ian,

Cheuk, Rosa,

Meyers, Cristina C.,

Ndubaku, Ral,

Schmid, Markus,

Kim, Christopher J.,

Brogden, Debra,

Ecker, Joseph R.,

Choy, Nathan,

Risseeuw, Eddy,

Stepanova, Anna N.,

Aguilar-Henonin, Laura,

Zeko, Albana,

Hom, Emily,

Prednis, Lance,

Weigel, Detlef,

Berry, Charles C.,

Jeske, Albert,

Gadrinab, Carmelita

2003

Overview

Over 225,000 independent Agrobacterium transferred DNA (T-DNA) insertion events in the genome of the reference plant Arabidopsis thaliana have been created that represent near saturation of the gene space. The precise locations were determined for more than 88,000 T-DNA insertions, which resulted in the identification of mutations in more than 21,700 of the ~29,454 predicted Arabidopsis genes. Genome-wide analysis of the distribution of integration events revealed the existence of a large integration site bias at both the chromosome and gene levels. Insertion mutations were identified in genes that are regulated in response to the plant hormone ethylene.

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Publisher

American Association for the Advancement of Science,The American Association for the Advancement of Science

Subject

3' Untranslated Regions

/ 5' Untranslated Regions

/ Agrobacterium radiobacter

/ Alleles

/ Arabidopsis - genetics

/ Arabidopsis - metabolism

/ Arabidopsis Proteins - genetics