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The impact of rare protein coding genetic variation on adult cognitive function

by Singh, Tarjinder , Hurles, Matthew E. , Lencz, Todd , Lam, Max , Chen, Chia-Yen , Palotie, Aarno , Tsai, Ellen A. , Huang, Hailiang , Runz, Heiko , Tian, Ruoyu , Ironfield, Holly , Gerety, Sebastian S. , Liu, Jimmy Z. , Sanderson, Mark , Daly, Mark , Rowley, Christine , Fang, Terry , Sanchez-Andrade, Gabriela , Ge, Tian , Urpa, Lea

in 13 / 38 / 38/23 / 38/91 / 45 / 631/208/205 / 631/208/366 / 64/60 / 692/308/2056 / Academic achievement / Adult / Agriculture / Animal Genetics and Genomics / Animals / Biobanks / Biomedical and Life Sciences / Biomedicine / Cancer Research / Carrier Proteins - genetics / Cognition / Cognitive ability / Educational attainment / Gene Function / Genes / Genetic diversity / Genetic Predisposition to Disease / Genetic Variation / Genetics / Genomes / Human Genetics / Humans / Intellectual disabilities / Mice / Neural coding / Neurodevelopmental Disorders / Nuclear Proteins - genetics / Phenotype / Proteins / Psychosis

2023

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2023

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2023

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Journal Article

The impact of rare protein coding genetic variation on adult cognitive function

Singh, Tarjinder,

Hurles, Matthew E.,

Lencz, Todd,

Lam, Max,

Chen, Chia-Yen,

Palotie, Aarno,

Tsai, Ellen A.,

Huang, Hailiang,

Runz, Heiko,

Tian, Ruoyu,

Ironfield, Holly,

Gerety, Sebastian S.,

Liu, Jimmy Z.,

Sanderson, Mark,

Daly, Mark,

Rowley, Christine,

Fang, Terry,

Sanchez-Andrade, Gabriela,

Ge, Tian,

Urpa, Lea

2023

Overview

Compelling evidence suggests that human cognitive function is strongly influenced by genetics. Here, we conduct a large-scale exome study to examine whether rare protein-coding variants impact cognitive function in the adult population ( n = 485,930). We identify eight genes ( ADGRB2 , KDM5B , GIGYF1 , ANKRD12 , SLC8A1 , RC3H2 , CACNA1A and BCAS3 ) that are associated with adult cognitive function through rare coding variants with large effects. Rare genetic architecture for cognitive function partially overlaps with that of neurodevelopmental disorders. In the case of KDM5B we show how the genetic dosage of one of these genes may determine the variability of cognitive, behavioral and molecular traits in mice and humans. We further provide evidence that rare and common variants overlap in association signals and contribute additively to cognitive function. Our study introduces the relevance of rare coding variants for cognitive function and unveils high-impact monogenic contributions to how cognitive function is distributed in the normal adult population. Analysis of rare coding variants in the UK Biobank identifies eight genes associated with adult cognitive function, including KDM5B . Rare and common variant signals overlap and contribute additively to the phenotype.

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Nature Publishing Group US,Nature Publishing Group

Subject

/ 38

/ 38/23

/ 38/91

/ 45

/ 631/208/205

/ 631/208/366

/ 64/60