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Temperature gradient capillary electrophoresis (TGCE)--a tool for the high-throughput discovery and mapping of SNPs and IDPs
by
Wen, T.J
, Liu, Z
, Yandeau-Nelson, M.D
, Chen, H.D
, Hsia, A.P
, Guo, L
, Schnable, P.S
, Wei, Y
in
Biological and medical sciences
/ capillary electrophoresis
/ celery
/ Chromosome Mapping
/ Chromosome Mapping - methods
/ Classical genetics, quantitative genetics, hybrids
/ corn
/ Deoxyribonucleic acid
/ DNA
/ Electrophoresis, Capillary
/ Electrophoresis, Capillary - methods
/ Ethyl Methanesulfonate
/ Fundamental and applied biological sciences. Psychology
/ genes
/ genetic markers
/ genetic polymorphism
/ genetic techniques and protocols
/ genetics
/ Genetics of eukaryotes. Biological and molecular evolution
/ genotyping
/ high performance liquid chromatography
/ inbred lines
/ insertion/deletion polymorphisms
/ methods
/ microsatellite repeats
/ Minisatellite Repeats
/ Minisatellite Repeats - genetics
/ polymerase chain reaction
/ Polymorphism, Single Nucleotide
/ Pteridophyta, spermatophyta
/ single nucleotide polymorphism
/ Temperature
/ temperature gradient capillary electrophoresis
/ Vegetals
/ Zea mays
/ Zea mays - genetics
2005
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Temperature gradient capillary electrophoresis (TGCE)--a tool for the high-throughput discovery and mapping of SNPs and IDPs
by
Wen, T.J
, Liu, Z
, Yandeau-Nelson, M.D
, Chen, H.D
, Hsia, A.P
, Guo, L
, Schnable, P.S
, Wei, Y
in
Biological and medical sciences
/ capillary electrophoresis
/ celery
/ Chromosome Mapping
/ Chromosome Mapping - methods
/ Classical genetics, quantitative genetics, hybrids
/ corn
/ Deoxyribonucleic acid
/ DNA
/ Electrophoresis, Capillary
/ Electrophoresis, Capillary - methods
/ Ethyl Methanesulfonate
/ Fundamental and applied biological sciences. Psychology
/ genes
/ genetic markers
/ genetic polymorphism
/ genetic techniques and protocols
/ genetics
/ Genetics of eukaryotes. Biological and molecular evolution
/ genotyping
/ high performance liquid chromatography
/ inbred lines
/ insertion/deletion polymorphisms
/ methods
/ microsatellite repeats
/ Minisatellite Repeats
/ Minisatellite Repeats - genetics
/ polymerase chain reaction
/ Polymorphism, Single Nucleotide
/ Pteridophyta, spermatophyta
/ single nucleotide polymorphism
/ Temperature
/ temperature gradient capillary electrophoresis
/ Vegetals
/ Zea mays
/ Zea mays - genetics
2005
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Temperature gradient capillary electrophoresis (TGCE)--a tool for the high-throughput discovery and mapping of SNPs and IDPs
by
Wen, T.J
, Liu, Z
, Yandeau-Nelson, M.D
, Chen, H.D
, Hsia, A.P
, Guo, L
, Schnable, P.S
, Wei, Y
in
Biological and medical sciences
/ capillary electrophoresis
/ celery
/ Chromosome Mapping
/ Chromosome Mapping - methods
/ Classical genetics, quantitative genetics, hybrids
/ corn
/ Deoxyribonucleic acid
/ DNA
/ Electrophoresis, Capillary
/ Electrophoresis, Capillary - methods
/ Ethyl Methanesulfonate
/ Fundamental and applied biological sciences. Psychology
/ genes
/ genetic markers
/ genetic polymorphism
/ genetic techniques and protocols
/ genetics
/ Genetics of eukaryotes. Biological and molecular evolution
/ genotyping
/ high performance liquid chromatography
/ inbred lines
/ insertion/deletion polymorphisms
/ methods
/ microsatellite repeats
/ Minisatellite Repeats
/ Minisatellite Repeats - genetics
/ polymerase chain reaction
/ Polymorphism, Single Nucleotide
/ Pteridophyta, spermatophyta
/ single nucleotide polymorphism
/ Temperature
/ temperature gradient capillary electrophoresis
/ Vegetals
/ Zea mays
/ Zea mays - genetics
2005
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Temperature gradient capillary electrophoresis (TGCE)--a tool for the high-throughput discovery and mapping of SNPs and IDPs
Journal Article
Temperature gradient capillary electrophoresis (TGCE)--a tool for the high-throughput discovery and mapping of SNPs and IDPs
2005
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Overview
Temperature gradient capillary electrophoresis (TGCE) can be used to distinguish heteroduplex from homoduplex DNA molecules and can thus be applied to the detection of various types of DNA polymorphisms. Unlike most single nucleotide polymorphism (SNP) detection technologies, TGCE can be used even in the absence of prior knowledge of the sequences of the underlying polymorphisms. TGCE is both sensitive and reliable in detecting SNPs, small InDel (insertion/deletion) polymorphisms (IDPs) and simple sequence repeats, and using this technique it is possible to detect a single SNP in amplicons of over 800 bp and 1-bp IDPs in amplicons of approximately 500 bp. Genotyping data obtained via TGCE are consistent with data obtained via gel-based detection technologies. For genetic mapping experiments, TGCE has a number of advantages over alternative heteroduplex-detection technologies such as celery endonuclease (CELI) and denaturing high-performance liquid chromatography (dHPLC). Multiplexing can increase TGCE's throughput to 12 markers on 94 recombinant inbreds per day. Given its ability to efficiently and reliably detect a variety of subtle DNA polymorphisms that occur at high frequency in genes, TGCE shows great promise for discovering polymorphisms and conducting genetic mapping and genotyping experiments.
Publisher
Springer,Springer Nature B.V
Subject
Biological and medical sciences
/ celery
/ Chromosome Mapping - methods
/ Classical genetics, quantitative genetics, hybrids
/ corn
/ DNA
/ Electrophoresis, Capillary - methods
/ Fundamental and applied biological sciences. Psychology
/ genes
/ genetic techniques and protocols
/ genetics
/ Genetics of eukaryotes. Biological and molecular evolution
/ high performance liquid chromatography
/ insertion/deletion polymorphisms
/ methods
/ Minisatellite Repeats - genetics
/ Polymorphism, Single Nucleotide
/ single nucleotide polymorphism
/ temperature gradient capillary electrophoresis
/ Vegetals
/ Zea mays
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