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Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome

by Herrera, Alex F , Ballen, Karen K , Pedamallu, Chandra Sekhar , Baden, Lindsey R , Gevers, Dirk , Marty, Francisco M , Soiffer, Robert J , Bhatt, Ami S , Duke, Fujiko , Antin, Joseph H , Hobbs, Gabriela , Earl, Ashlee M , Freeman, Samuel S , Meyerson, Matthew , Chen, Yi-Bin , Young, Sarah , Kostic, Aleksander D , Jung, Joonil , Hasserjian, Robert , Garrett, Wendy S , Ojesina, Akinyemi I , Hornick, Jason L , Michaud, Monia , Walker, Bruce J

in Antibiotics / Biological and medical sciences / Biopsy / Blood diseases / Bradyrhizobium / Bradyrhizobium - classification / Bradyrhizobium - genetics / Bradyrhizobium - isolation & purification / Colitis / Colitis - immunology / Colitis - microbiology / Colon / Colon - microbiology / Colon cancer / Colonic Neoplasms - microbiology / Computer applications / Diarrhea - microbiology / Disease / DNA sequencing / DNA, Bacterial - analysis / Female / Fetal Blood / Fluorescence in situ hybridization / General aspects / Genome, Bacterial / Genomes / Graft vs Host Disease - microbiology / Graft-versus-host reaction / Hematopoietic Stem Cell Transplantation - adverse effects / Homology / Humans / Immunocompromised Host / Immunosuppression / Inflammatory bowel disease / Male / Medical sciences / Opportunist infection / Opportunistic Infections - microbiology / Paraffin / Paraffin Embedding / Patients / Phylogeny / Polymerase Chain Reaction / Sequence Analysis, DNA / Stem cell transplantation / Stem cells / Transplants & implants

2013

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2013

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2013

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Journal Article

Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome

Herrera, Alex F,

Ballen, Karen K,

Pedamallu, Chandra Sekhar,

Baden, Lindsey R,

Gevers, Dirk,

Marty, Francisco M,

Soiffer, Robert J,

Bhatt, Ami S,

Duke, Fujiko,

Antin, Joseph H,

Hobbs, Gabriela,

Earl, Ashlee M,

Freeman, Samuel S,

Meyerson, Matthew,

Chen, Yi-Bin,

Young, Sarah,

Kostic, Aleksander D,

Jung, Joonil,

Hasserjian, Robert,

Garrett, Wendy S,

Ojesina, Akinyemi I,

Hornick, Jason L,

Michaud, Monia,

Walker, Bruce J

2013

Overview

The subtraction of human and infectious-agent sequences from a whole-genome analysis of colon-biopsy samples from patients with cord colitis points to a bradyrhizobium species as a possible causative agent. Allogeneic hematopoietic stem-cell transplantation (HSCT) is a cornerstone of therapy for patients with certain hematologic diseases and is associated with a risk of serious complications. 1 , 2 Conditioning and antimicrobial therapy can have direct toxic effects and alter the gut microbiome. 3 Immunosuppression and the limited efficacy of immunologically naive stem cells in umbilical-cord HSCT can result in life-threatening infections, especially in the first year after transplantation. 4 Gastrointestinal toxicity is common after HSCT and can be manifested clinically as colitis. 5 – 8 Several types of colitis affect patients undergoing transplantation; these include bacterial, viral, and parasitic types as well as colitis associated with . . .

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Publisher

Massachusetts Medical Society

Subject

Antibiotics

/ Biological and medical sciences

/ Biopsy

/ Blood diseases

/ Bradyrhizobium

/ Bradyrhizobium - classification

/ Bradyrhizobium - genetics