Journal Article

Design and in vitro realization of carbon-conserving photorespiration

Fleishman, Sarel J., Scheffen, Marieke, Bar-Even, Arren, Trudeau, Devin L., Edlich-Muth, Christian, Avizemer, Ziv, Erb, Tobias J., Goldsmith, Moshe, Tawfik, Dan S., Zarzycki, Jan, Cotton, Charles A. R., Khersonsky, Olga

2018

Overview

Photorespiration recycles ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) oxygenation product, 2-phosphoglycolate, back into the Calvin Cycle. Natural photorespiration, however, limits agricultural productivity by dissipating energy and releasing CO₂. Several photorespiration bypasses have been previously suggested but were limited to existing enzymes and pathways that release CO₂. Here, we harness the power of enzyme and metabolic engineering to establish synthetic routes that bypass photorespiration without CO₂ release. By defining specific reaction rules, we systematically identified promising routes that assimilate 2-phosphoglycolate into the Calvin Cycle without carbon loss. We further developed a kinetic–stoichiometric model that indicates that the identified synthetic shunts could potentially enhance carbon fixation rate across the physiological range of irradiation and CO₂, even if most of their enzymes operate at a tenth of Rubisco’s maximal carboxylation activity. Glycolate reduction to glycolaldehyde is essential for several of the synthetic shunts but is not known to occur naturally. We, therefore, used computational design and directed evolution to establish this activity in two sequential reactions. An acetyl-CoA synthetase was engineered for higher stability and glycolyl-CoA synthesis. A propionyl-CoA reductase was engineered for higher selectivity for glycolyl-CoA and for use of NADPH over NAD⁺, thereby favoring reduction over oxidation. The engineered glycolate reduction module was then combined with downstream condensation and assimilation of glycolaldehyde to ribulose 1,5-bisphosphate, thus providing proof of principle for a carbon-conserving photorespiration pathway.

• Publisher: National Academy of Sciences
• Subject: Agricultural production / Biochemistry / Biological Sciences / Biophysics and Computational Biology / Bypasses / Calvin cycle / Carbon / Carbon cycle / Carbon dioxide / Carbon Dioxide - metabolism / Carbon fixation / Carboxylation / Chemical synthesis / Computer applications / Computer Simulation / Condensates / Design / Directed evolution / Enzymes / Glycolaldehyde / Glycolates - metabolism / Irradiation / Kinetics / Metabolic Engineering / Metabolism / Models, Biological / NAD / NADP / Oxidation / Oxygenase / Oxygenation / Photorespiration / Photosynthesis - physiology / Physical Sciences / PNAS Plus / Protein Engineering / Radiation / Reductase / Reduction / Ribulose-1,5-bisphosphate / Ribulose-bisphosphate carboxylase / Ribulose-Bisphosphate Carboxylase - metabolism / Selectivity / Shunts / Synthetic Biology