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ZAP isoforms regulate unfolded protein response and epithelial- mesenchymal transition
by
Roca, Xavier
, Xu, Shaohai
, Wirawan, Melissa
, Ly, Phuong Thao
, Luo, Dahai
in
Alternative splicing
/ Antisense oligonucleotides
/ Biological Sciences
/ Cell Biology
/ Cell migration
/ Cell viability
/ Coronaviruses
/ Cytosol
/ Epithelial-Mesenchymal Transition - genetics
/ Heterogeneous Nuclear Ribonucleoprotein A1 - metabolism
/ Heterogeneous-Nuclear Ribonucleoproteins - genetics
/ Heterogeneous-Nuclear Ribonucleoproteins - metabolism
/ HIV
/ Human immunodeficiency virus
/ Humans
/ Innate immunity
/ Isoforms
/ Localization
/ Mesenchyme
/ Oligonucleotides
/ Polypyrimidine Tract-Binding Protein - genetics
/ Polypyrimidine Tract-Binding Protein - metabolism
/ Protein folding
/ Protein Isoforms - genetics
/ Protein Isoforms - metabolism
/ Proteins
/ Ribonucleoproteins (small nuclear)
/ Ribonucleoproteins, Small Nuclear - metabolism
/ RNA, Messenger - metabolism
/ RNA, Viral - metabolism
/ RNA-Binding Proteins - genetics
/ RNA-Binding Proteins - metabolism
/ Splicing
/ Splicing factors
/ Transcriptomics
/ Unfolded Protein Response
2022
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ZAP isoforms regulate unfolded protein response and epithelial- mesenchymal transition
by
Roca, Xavier
, Xu, Shaohai
, Wirawan, Melissa
, Ly, Phuong Thao
, Luo, Dahai
in
Alternative splicing
/ Antisense oligonucleotides
/ Biological Sciences
/ Cell Biology
/ Cell migration
/ Cell viability
/ Coronaviruses
/ Cytosol
/ Epithelial-Mesenchymal Transition - genetics
/ Heterogeneous Nuclear Ribonucleoprotein A1 - metabolism
/ Heterogeneous-Nuclear Ribonucleoproteins - genetics
/ Heterogeneous-Nuclear Ribonucleoproteins - metabolism
/ HIV
/ Human immunodeficiency virus
/ Humans
/ Innate immunity
/ Isoforms
/ Localization
/ Mesenchyme
/ Oligonucleotides
/ Polypyrimidine Tract-Binding Protein - genetics
/ Polypyrimidine Tract-Binding Protein - metabolism
/ Protein folding
/ Protein Isoforms - genetics
/ Protein Isoforms - metabolism
/ Proteins
/ Ribonucleoproteins (small nuclear)
/ Ribonucleoproteins, Small Nuclear - metabolism
/ RNA, Messenger - metabolism
/ RNA, Viral - metabolism
/ RNA-Binding Proteins - genetics
/ RNA-Binding Proteins - metabolism
/ Splicing
/ Splicing factors
/ Transcriptomics
/ Unfolded Protein Response
2022
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ZAP isoforms regulate unfolded protein response and epithelial- mesenchymal transition
by
Roca, Xavier
, Xu, Shaohai
, Wirawan, Melissa
, Ly, Phuong Thao
, Luo, Dahai
in
Alternative splicing
/ Antisense oligonucleotides
/ Biological Sciences
/ Cell Biology
/ Cell migration
/ Cell viability
/ Coronaviruses
/ Cytosol
/ Epithelial-Mesenchymal Transition - genetics
/ Heterogeneous Nuclear Ribonucleoprotein A1 - metabolism
/ Heterogeneous-Nuclear Ribonucleoproteins - genetics
/ Heterogeneous-Nuclear Ribonucleoproteins - metabolism
/ HIV
/ Human immunodeficiency virus
/ Humans
/ Innate immunity
/ Isoforms
/ Localization
/ Mesenchyme
/ Oligonucleotides
/ Polypyrimidine Tract-Binding Protein - genetics
/ Polypyrimidine Tract-Binding Protein - metabolism
/ Protein folding
/ Protein Isoforms - genetics
/ Protein Isoforms - metabolism
/ Proteins
/ Ribonucleoproteins (small nuclear)
/ Ribonucleoproteins, Small Nuclear - metabolism
/ RNA, Messenger - metabolism
/ RNA, Viral - metabolism
/ RNA-Binding Proteins - genetics
/ RNA-Binding Proteins - metabolism
/ Splicing
/ Splicing factors
/ Transcriptomics
/ Unfolded Protein Response
2022
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ZAP isoforms regulate unfolded protein response and epithelial- mesenchymal transition
Journal Article
ZAP isoforms regulate unfolded protein response and epithelial- mesenchymal transition
2022
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Overview
Human ZAP inhibits many viruses, including HIV and coronaviruses, by binding to viral RNAs to promote their degradation and/or translation suppression. However, the regulatory role of ZAP in host mRNAs is largely unknown. Two major alternatively spliced ZAP isoforms, the constitutively expressed ZAPL and the infection-inducible ZAPS, play overlapping yet different antiviral and other roles that need further characterization. We found that the splicing factors hnRNPA1/A2, PTBP1/2, and U1-snRNP inhibit ZAPS production and demonstrated the feasibility to modulate the ZAPL/S balance by splice-switching antisense oligonucleotides in human cells. Transcriptomic analysis of ZAP-isoform–specific knockout cells revealed uncharacterized host mRNAs targeted by ZAPL/S with broad cellular functions such as unfolded protein response (UPR), epithelial-mesenchymal transition (EMT), and innate immunity. We established that endogenous ZAPL and ZAPS localize to membrane compartments and cytosol, respectively, and that the differential localization correlates with their target-RNA specificity. We showed that the ZAP isoforms regulated different UPR branches under resting and stress conditions and affected cell viability during ER stress. We also provided evidence for a different function of the ZAP isoforms in EMT-related cell migration, with effects that are cell-type dependent. Overall, this study demonstrates that the competition between splicing and IPA is a potential target for the modulation of the ZAPL/S balance, and reports new cellular transcripts and processes regulated by the ZAP isoforms.
Publisher
National Academy of Sciences
Subject
/ Cytosol
/ Epithelial-Mesenchymal Transition - genetics
/ Heterogeneous Nuclear Ribonucleoprotein A1 - metabolism
/ Heterogeneous-Nuclear Ribonucleoproteins - genetics
/ Heterogeneous-Nuclear Ribonucleoproteins - metabolism
/ HIV
/ Human immunodeficiency virus
/ Humans
/ Isoforms
/ Polypyrimidine Tract-Binding Protein - genetics
/ Polypyrimidine Tract-Binding Protein - metabolism
/ Protein Isoforms - metabolism
/ Proteins
/ Ribonucleoproteins (small nuclear)
/ Ribonucleoproteins, Small Nuclear - metabolism
/ RNA-Binding Proteins - genetics
/ RNA-Binding Proteins - metabolism
/ Splicing
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