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In Silico Identification of Natural Product-Based Inhibitors Targeting IL-1β/IL-1R Protein–Protein Interface
by
Liu, Ting-ting
, Allahyani, Mamdouh
, Liu, Pei
, Almehmadi, Mazen
, Chen, Yan-kun
, Adil, Muhammad
, Khan, Muhammad Raheel
, Peng, Qinghua
, Alsaiari, Ahad Amer
, Alshabrmi, Fahad M.
in
Amino acids
/ Binding sites
/ Biological Products - pharmacology
/ Chronic illnesses
/ COVID-19
/ Cytokines
/ Eye diseases
/ Humans
/ Hydrogen bonds
/ IL-1β
/ Inflammation
/ Ligands
/ MD simulation
/ molecular docking
/ Molecular Docking Simulation
/ Molecular Dynamics Simulation
/ natural products
/ Pathogenesis
/ Proteins
/ Traditional Chinese medicine
/ Tumor necrosis factor-TNF
/ virtual screening
2023
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In Silico Identification of Natural Product-Based Inhibitors Targeting IL-1β/IL-1R Protein–Protein Interface
by
Liu, Ting-ting
, Allahyani, Mamdouh
, Liu, Pei
, Almehmadi, Mazen
, Chen, Yan-kun
, Adil, Muhammad
, Khan, Muhammad Raheel
, Peng, Qinghua
, Alsaiari, Ahad Amer
, Alshabrmi, Fahad M.
in
Amino acids
/ Binding sites
/ Biological Products - pharmacology
/ Chronic illnesses
/ COVID-19
/ Cytokines
/ Eye diseases
/ Humans
/ Hydrogen bonds
/ IL-1β
/ Inflammation
/ Ligands
/ MD simulation
/ molecular docking
/ Molecular Docking Simulation
/ Molecular Dynamics Simulation
/ natural products
/ Pathogenesis
/ Proteins
/ Traditional Chinese medicine
/ Tumor necrosis factor-TNF
/ virtual screening
2023
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In Silico Identification of Natural Product-Based Inhibitors Targeting IL-1β/IL-1R Protein–Protein Interface
by
Liu, Ting-ting
, Allahyani, Mamdouh
, Liu, Pei
, Almehmadi, Mazen
, Chen, Yan-kun
, Adil, Muhammad
, Khan, Muhammad Raheel
, Peng, Qinghua
, Alsaiari, Ahad Amer
, Alshabrmi, Fahad M.
in
Amino acids
/ Binding sites
/ Biological Products - pharmacology
/ Chronic illnesses
/ COVID-19
/ Cytokines
/ Eye diseases
/ Humans
/ Hydrogen bonds
/ IL-1β
/ Inflammation
/ Ligands
/ MD simulation
/ molecular docking
/ Molecular Docking Simulation
/ Molecular Dynamics Simulation
/ natural products
/ Pathogenesis
/ Proteins
/ Traditional Chinese medicine
/ Tumor necrosis factor-TNF
/ virtual screening
2023
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In Silico Identification of Natural Product-Based Inhibitors Targeting IL-1β/IL-1R Protein–Protein Interface
Journal Article
In Silico Identification of Natural Product-Based Inhibitors Targeting IL-1β/IL-1R Protein–Protein Interface
2023
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Overview
IL-1β mediates inflammation and regulates immune responses, cell proliferation, and differentiation. Dysregulation of IL-1β is linked to inflammatory and autoimmune diseases. Elevated IL-1β levels are found in patients with severe COVID-19, indicating its excessive production may worsen the disease. Also, dry eye disease patients show high IL-1β levels in tears and conjunctival epithelium. Therefore, IL-1β signaling is a potential therapeutic targeting for COVID-19 and aforementioned diseases. No small-molecule IL-1β inhibitor is clinically approved despite efforts. Developing such inhibitors is highly desirable. Herein, a docking-based strategy was used to screen the TCM (Traditional Chinese Medicine) database to identify possible IL-1β inhibitors with desirable pharmacological characteristics by targeting the IL-1β/IL-1R interface. Primarily, the docking-based screening was performed by selecting the crucial residues of IL-1β interface to retrieve the potential compounds. Afterwards, the compounds were shortlisted on the basis of binding scores and significant interactions with the crucial residues of IL-1β. Further, to gain insights into the dynamic behavior of the protein–ligand interactions, MD simulations were performed. The analysis suggests that four selected compounds were stabilized in an IL-1β pocket, possibly blocking the formation of an IL-1β/IL-1R complex. This indicates their potential to interfere with the immune response, making them potential therapeutic agents to investigate further.
Publisher
MDPI AG,MDPI
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