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Molecular detection of SARS-CoV-2 in formalin-fixed, paraffin-embedded specimens
by
Babka, April M.
, Zeng, Xiankun
, Radoshitzky, Sheli R.
, Kearney, Brian J.
, Liu, Jun
, Kuhn, Jens H.
in
Animal models
/ Animals
/ Antibodies, Viral - immunology
/ Antigens
/ Antigens, Viral - isolation & purification
/ Betacoronavirus - genetics
/ Betacoronavirus - immunology
/ Betacoronavirus - isolation & purification
/ Clinical Laboratory Techniques - methods
/ Coronavirus Infections - diagnosis
/ Coronavirus Infections - pathology
/ Coronavirus Infections - virology
/ Coronaviruses
/ COVID-19
/ COVID-19 Testing
/ Disease transmission
/ Formaldehyde
/ Genomes
/ Humans
/ Hybridization
/ Immunofluorescence
/ Immunohistochemistry
/ In Situ Hybridization
/ Mice
/ Middle East respiratory syndrome
/ Monoclonal antibodies
/ Nucleocapsid Proteins - immunology
/ Nucleocapsids
/ Pandemics
/ Paraffin Embedding - methods
/ Pathogenesis
/ Pathology, Molecular - methods
/ Pneumonia, Viral - pathology
/ Pneumonia, Viral - virology
/ Polyclonal antibodies
/ Proteins
/ Public health
/ Rabbits
/ Respiratory diseases
/ Ribonucleic acid
/ RNA
/ RNA, Viral - isolation & purification
/ SARS-CoV-2
/ Severe acute respiratory syndrome coronavirus 2
/ Spike protein
/ Technical Advance
/ Tissue Fixation - methods
/ Viral infections
/ Viruses
2020
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Molecular detection of SARS-CoV-2 in formalin-fixed, paraffin-embedded specimens
by
Babka, April M.
, Zeng, Xiankun
, Radoshitzky, Sheli R.
, Kearney, Brian J.
, Liu, Jun
, Kuhn, Jens H.
in
Animal models
/ Animals
/ Antibodies, Viral - immunology
/ Antigens
/ Antigens, Viral - isolation & purification
/ Betacoronavirus - genetics
/ Betacoronavirus - immunology
/ Betacoronavirus - isolation & purification
/ Clinical Laboratory Techniques - methods
/ Coronavirus Infections - diagnosis
/ Coronavirus Infections - pathology
/ Coronavirus Infections - virology
/ Coronaviruses
/ COVID-19
/ COVID-19 Testing
/ Disease transmission
/ Formaldehyde
/ Genomes
/ Humans
/ Hybridization
/ Immunofluorescence
/ Immunohistochemistry
/ In Situ Hybridization
/ Mice
/ Middle East respiratory syndrome
/ Monoclonal antibodies
/ Nucleocapsid Proteins - immunology
/ Nucleocapsids
/ Pandemics
/ Paraffin Embedding - methods
/ Pathogenesis
/ Pathology, Molecular - methods
/ Pneumonia, Viral - pathology
/ Pneumonia, Viral - virology
/ Polyclonal antibodies
/ Proteins
/ Public health
/ Rabbits
/ Respiratory diseases
/ Ribonucleic acid
/ RNA
/ RNA, Viral - isolation & purification
/ SARS-CoV-2
/ Severe acute respiratory syndrome coronavirus 2
/ Spike protein
/ Technical Advance
/ Tissue Fixation - methods
/ Viral infections
/ Viruses
2020
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Molecular detection of SARS-CoV-2 in formalin-fixed, paraffin-embedded specimens
by
Babka, April M.
, Zeng, Xiankun
, Radoshitzky, Sheli R.
, Kearney, Brian J.
, Liu, Jun
, Kuhn, Jens H.
in
Animal models
/ Animals
/ Antibodies, Viral - immunology
/ Antigens
/ Antigens, Viral - isolation & purification
/ Betacoronavirus - genetics
/ Betacoronavirus - immunology
/ Betacoronavirus - isolation & purification
/ Clinical Laboratory Techniques - methods
/ Coronavirus Infections - diagnosis
/ Coronavirus Infections - pathology
/ Coronavirus Infections - virology
/ Coronaviruses
/ COVID-19
/ COVID-19 Testing
/ Disease transmission
/ Formaldehyde
/ Genomes
/ Humans
/ Hybridization
/ Immunofluorescence
/ Immunohistochemistry
/ In Situ Hybridization
/ Mice
/ Middle East respiratory syndrome
/ Monoclonal antibodies
/ Nucleocapsid Proteins - immunology
/ Nucleocapsids
/ Pandemics
/ Paraffin Embedding - methods
/ Pathogenesis
/ Pathology, Molecular - methods
/ Pneumonia, Viral - pathology
/ Pneumonia, Viral - virology
/ Polyclonal antibodies
/ Proteins
/ Public health
/ Rabbits
/ Respiratory diseases
/ Ribonucleic acid
/ RNA
/ RNA, Viral - isolation & purification
/ SARS-CoV-2
/ Severe acute respiratory syndrome coronavirus 2
/ Spike protein
/ Technical Advance
/ Tissue Fixation - methods
/ Viral infections
/ Viruses
2020
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Molecular detection of SARS-CoV-2 in formalin-fixed, paraffin-embedded specimens
Journal Article
Molecular detection of SARS-CoV-2 in formalin-fixed, paraffin-embedded specimens
2020
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Overview
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the cause of human coronavirus disease 2019 (COVID-19), emerged in Wuhan, China, in December 2019. The virus rapidly spread globally, resulting in a public health crisis including almost 5 million cases and 323,256 deaths as of May 21, 2020. Here, we describe the identification and evaluation of commercially available reagents and assays for the molecular detection of SARS-CoV-2 in infected FFPE cell pellets. We identified a suitable rabbit polyclonal anti-SARS-CoV spike protein antibody and a mouse monoclonal anti-SARS-CoV nucleocapsid protein (NP) antibody for cross-detection of the respective SARS-CoV-2 proteins by IHC and immunofluorescence assay (IFA). Next, we established RNAscope in situ hybridization (ISH) to detect SARS-CoV-2 RNA. Furthermore, we established a multiplex FISH (mFISH) to detect positive-sense SARS-CoV-2 RNA and negative-sense SARS-CoV-2 RNA (a replicative intermediate indicating viral replication). Finally, we developed a dual staining assay using IHC and ISH to detect SARS-CoV-2 antigen and RNA in the same FFPE section. It is hoped that these reagents and assays will accelerate COVID-19 pathogenesis studies in humans and in COVID-19 animal models.
Publisher
American Society for Clinical Investigation
Subject
/ Animals
/ Antibodies, Viral - immunology
/ Antigens
/ Antigens, Viral - isolation & purification
/ Betacoronavirus - immunology
/ Betacoronavirus - isolation & purification
/ Clinical Laboratory Techniques - methods
/ Coronavirus Infections - diagnosis
/ Coronavirus Infections - pathology
/ Coronavirus Infections - virology
/ COVID-19
/ Genomes
/ Humans
/ Mice
/ Middle East respiratory syndrome
/ Nucleocapsid Proteins - immunology
/ Paraffin Embedding - methods
/ Pathology, Molecular - methods
/ Pneumonia, Viral - pathology
/ Proteins
/ Rabbits
/ RNA
/ RNA, Viral - isolation & purification
/ Severe acute respiratory syndrome coronavirus 2
/ Viruses
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