Journal Article

Quantification of rearrangements and evolution of mitochondrial gene order of Acari (Chelicerata: Arachnida)

Aydemir, Habeş Bilal

2024

Overview

Invertebrate mitogenomes are generally fixed with formal 37 genes: 13 PCGs encoded subunits of OXPHOS, 2 ribosomal RNA (rRNA) functional in the translation of these PCGs and 22 transfer RNA (tRNA) genes. The order of these genes varies greatly among organisms and named rearrangement. Rearrangement patterns of mitochondrial genomes may shed light on mutation processes and evolutionary relationships of organisms. Mitochondrial gene organization is highly variable among Acari, so rearrangement is a very common mitogenomic pattern in this group. In this study, 258 unique Acari (Acariformes + Parasitiformes) mitogenomes were downloaded from NCBI and studied about rearrangement patterns. Sixty-seven mitotypes were determined among Acari and the most rearranged genes were trnL1 and nad2. Following that, trnI, trnS1, trnN, trnE, trnT, and trnP genes are remarkably mobile (RF > 95%). Conversely, atp6 , cox3 , trnG, and cytb genes also appears to be quite stable (RF < 20%). Within Acari, mean distance calculations are varied from 1.210 in atp8 to 0.155 in rrnS. Contrary to expectations, among Acari mobile tRNA genes appear to be conserved in sequences, whereas PCGs have higher distance values and seem to be mutated. Consistently, tRNA genes seem saturated, but some PCGs ( atp6 , cox genes, cytb , nad1 , and nad6 ) are not saturated. These values do not correlate with each other ( p  > 0.005). This discrepancy may indicate that the genes were rearranged after mutation load; consistent with this, DAMBE saturation values are also not correlated with RF values. Parasitiformes mitogenomes are more mobile than Acariformes mitogenomes and may be under the effect of selective sweeping.

• Publisher: Springer Berlin Heidelberg,Springer,Springer Nature B.V
• Subject: Acari / Acariformes / Animals / Arachnida - classification / Arachnida - genetics / Biomedical and Life Sciences / Biomedicine / evolution / Evolution, Molecular / Gene Order / Gene Rearrangement / Genes / Genes, Mitochondrial - genetics / Genetic research / Genome, Mitochondrial - genetics / Genomes / Immunology / invertebrates / Medical Microbiology / Microbiology / Mitochondria / Mitochondrial DNA / mitochondrial genes / mitochondrial genome / Molecular evolution / Mutation / Parasitiformes / Phylogeny / ribosomal RNA / RNA, Transfer - genetics / rRNA / Transfer RNA / tRNA