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Transposons are important contributors to gene expression variability under selection in rice populations
by
Gupta, Sonal
, Purugganan, Michael
, Casacuberta, Josep M
, Morales-Díaz, Noemia
, Castanera, Raúl
in
Datasets
/ Domestication
/ Drought
/ eQTL
/ Evolutionary Biology
/ Gene Expression
/ Gene mapping
/ Genetics and Genomics
/ Genome, Plant
/ Genomes
/ Genotype & phenotype
/ Mutation
/ Oriza rufipogon
/ Oriza sativa
/ Oryza - genetics
/ Oryza - metabolism
/ Oryza rufipogon
/ Oryza sativa indica
/ Oryza sativa japonica
/ Plant Breeding
/ Polymorphism
/ Polymorphism, Genetic
/ positive selection
/ Quantitative trait loci
/ Rice
/ Signal transduction
/ transposable elements
/ Transposons
2023
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Transposons are important contributors to gene expression variability under selection in rice populations
by
Gupta, Sonal
, Purugganan, Michael
, Casacuberta, Josep M
, Morales-Díaz, Noemia
, Castanera, Raúl
in
Datasets
/ Domestication
/ Drought
/ eQTL
/ Evolutionary Biology
/ Gene Expression
/ Gene mapping
/ Genetics and Genomics
/ Genome, Plant
/ Genomes
/ Genotype & phenotype
/ Mutation
/ Oriza rufipogon
/ Oriza sativa
/ Oryza - genetics
/ Oryza - metabolism
/ Oryza rufipogon
/ Oryza sativa indica
/ Oryza sativa japonica
/ Plant Breeding
/ Polymorphism
/ Polymorphism, Genetic
/ positive selection
/ Quantitative trait loci
/ Rice
/ Signal transduction
/ transposable elements
/ Transposons
2023
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Transposons are important contributors to gene expression variability under selection in rice populations
by
Gupta, Sonal
, Purugganan, Michael
, Casacuberta, Josep M
, Morales-Díaz, Noemia
, Castanera, Raúl
in
Datasets
/ Domestication
/ Drought
/ eQTL
/ Evolutionary Biology
/ Gene Expression
/ Gene mapping
/ Genetics and Genomics
/ Genome, Plant
/ Genomes
/ Genotype & phenotype
/ Mutation
/ Oriza rufipogon
/ Oriza sativa
/ Oryza - genetics
/ Oryza - metabolism
/ Oryza rufipogon
/ Oryza sativa indica
/ Oryza sativa japonica
/ Plant Breeding
/ Polymorphism
/ Polymorphism, Genetic
/ positive selection
/ Quantitative trait loci
/ Rice
/ Signal transduction
/ transposable elements
/ Transposons
2023
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Transposons are important contributors to gene expression variability under selection in rice populations
Journal Article
Transposons are important contributors to gene expression variability under selection in rice populations
2023
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Overview
Transposable elements (TEs) are an important source of genome variability. Here, we analyze their contribution to gene expression variability in rice by performing a TE insertion polymorphism expression quantitative trait locus mapping using expression data from 208 varieties from the Oryza sativa ssp. indica and O. sativa ssp. japonica subspecies. Our data show that TE insertions are associated with changes of expression of many genes known to be targets of rice domestication and breeding. An important fraction of these insertions were already present in the rice wild ancestors, and have been differentially selected in indica and japonica rice populations. Taken together, our results show that small changes of expression in signal transduction genes induced by TE insertions accompany the domestication and adaptation of rice populations.
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