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FaST linear mixed models for genome-wide association studies
by
Kadie, Carl M
, Listgarten, Jennifer
, Liu, Ying
, Heckerman, David
, Lippert, Christoph
, Davidson, Robert I
in
631/1647/2217/2138
/ 631/1647/48
/ Algorithms
/ Bioinformatics
/ Biological Microscopy
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ brief-communication
/ Computer Simulation
/ Data analysis
/ Genome-Wide Association Study
/ Genomics
/ Life Sciences
/ Models, Genetic
/ Proteomics
/ Single nucleotide polymorphisms
/ Software
2011
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FaST linear mixed models for genome-wide association studies
by
Kadie, Carl M
, Listgarten, Jennifer
, Liu, Ying
, Heckerman, David
, Lippert, Christoph
, Davidson, Robert I
in
631/1647/2217/2138
/ 631/1647/48
/ Algorithms
/ Bioinformatics
/ Biological Microscopy
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ brief-communication
/ Computer Simulation
/ Data analysis
/ Genome-Wide Association Study
/ Genomics
/ Life Sciences
/ Models, Genetic
/ Proteomics
/ Single nucleotide polymorphisms
/ Software
2011
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While trying to remove the title from your shelf something went wrong :( Kindly try again later!
Do you wish to request the book?
FaST linear mixed models for genome-wide association studies
by
Kadie, Carl M
, Listgarten, Jennifer
, Liu, Ying
, Heckerman, David
, Lippert, Christoph
, Davidson, Robert I
in
631/1647/2217/2138
/ 631/1647/48
/ Algorithms
/ Bioinformatics
/ Biological Microscopy
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ brief-communication
/ Computer Simulation
/ Data analysis
/ Genome-Wide Association Study
/ Genomics
/ Life Sciences
/ Models, Genetic
/ Proteomics
/ Single nucleotide polymorphisms
/ Software
2011
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FaST linear mixed models for genome-wide association studies
Journal Article
FaST linear mixed models for genome-wide association studies
2011
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Overview
An algorithm for linear mixed models substantially reduces memory usage and run time for genome-wide association studies. The improved algorithm scales linearly in cohort size, allowing the application of these models to much larger samples.
We describe factored spectrally transformed linear mixed models (FaST-LMM), an algorithm for genome-wide association studies (GWAS) that scales linearly with cohort size in both run time and memory use. On Wellcome Trust data for 15,000 individuals, FaST-LMM ran an order of magnitude faster than current efficient algorithms. Our algorithm can analyze data for 120,000 individuals in just a few hours, whereas current algorithms fail on data for even 20,000 individuals (
http://mscompbio.codeplex.com/
).
Publisher
Nature Publishing Group US,Nature Publishing Group
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