Journal Article

From BIDS-Formatted EEG Data to Sensor-Space Group Results: A Fully Reproducible Workflow With EEGLAB and LIMO EEG

Martinez-Cancino, Ramon, Pernet, Cyril R., Truong, Dung, Makeig, Scott, Delorme, Arnaud

2021

Overview

Reproducibility is a cornerstone of scientific communication without which one cannot build upon each other’s work. Because modern human brain imaging relies on many integrated steps with a variety of possible algorithms, it has, however, become impossible to report every detail of a data processing workflow. In response to this analytical complexity, community recommendations are to share data analysis pipelines (scripts that implement workflows). Here we show that this can easily be done using EEGLAB and tools built around it. BIDS tools allow importing all the necessary information and create a study from electroencephalography (EEG)-Brain Imaging Data Structure compliant data. From there preprocessing can be carried out in only a few steps using EEGLAB and statistical analyses performed using the LIMO EEG plug-in. Using Wakeman and Henson (2015) face dataset, we illustrate how to prepare data and build different statistical models, a standard factorial design (faces ∗ repetition), and a more modern trial-based regression approach for the stimulus repetition effect, all in a few reproducible command lines.

• Publisher: Frontiers Media SA,Frontiers,Frontiers Media S.A
• Subject: Automation / brain imaging data structure / Cognitive science / Data processing / Datasets / EEG / EEGLAB toolbox / LIMO EEG / linear models / Mathematical models / Medical imaging / Neuroimaging / Neuroscience / Pipelines / preprocessing algorithm / Repetition / Reproducibility / reproducibility and tools / Statistical analysis