Journal Article

A twin xanthan lyase-dependent xanthan degradation system in Paenibacillus taichungensis I5

Frank, Oliver, Liebl, Wolfgang, Berezina, Oksana V., Rykov, Sergey V., Han, Rui, Ludwig, Christina, Baudrexl, Melanie

2026

Overview

Xanthan gum, a natural heteropolysaccharide produced by Xanthomonas species , has many biotechnological applications across industries due to its unique rheological properties. Expanding its utility requires specific enzymes capable of targeted xanthan modification or degradation. In this study, a novel bacterial strain, isolated from a spoiled xanthan sample and identified as Paenibacillus taichungensis I5, was shown to degrade xanthan using a plate screening assay with Congo red. Activity tests of crude enzyme in culture supernatant demonstrated the secretion of xanthan-degrading enzymes. Genome and proteome analyses suggest a chromosomal xanthan utilization locus encoding a suite of enzymes, including a xanthanase (Pt_XanGH9), two xanthan lyases (Pt_XanPL8a and Pt_XanPL8b), two unsaturated glucuronidases, two α-mannosidases, as well as transport and regulator proteins. Functional characterization through recombinant protein expression and enzyme assays confirmed the functions of Pt_XanGH9, Pt_XanPL8a and Pt_XanPL8b on native xanthan and xanthan-derived oligosaccharides. The polysaccharide degradation products released by these enzymes were identified via LC–MS analysis and suggested two xanthan lyases with divergent cleavage preferences. In contrast to Pt_XanPL8a, Pt_XanPL8b is synthesized with an N-terminal signal peptide, yet both lyases were detected in cell-free supernatant during growth on xanthan. Based on the composition of the xanthan utilization gene cluster and preliminary enzyme characteristics, a working model for xanthan utilization by P. taichungensis I5 is proposed. Reaching a better understanding of bacterial xanthan degrading pathways and the enzymes involved may help to develop modified xanthan derivatives and xanthan degrading enzymes that align with the specific demands of various industrial process. Key points • The genome of P. taichungensis I5 encodes a xanthan utilization locus. • P. taichungensis I5 employs a twin lyase-dependent xanthan utilization system. • The two xanthan lyases differ in cellular localization and in cleavage specificity.

• Publisher: Springer Berlin Heidelberg,Springer Nature B.V,Springer
• Subject: Bacteria / Bacterial Proteins - genetics / Bacterial Proteins - metabolism / Biodegradation / Biomedical and Life Sciences / Biotechnology / Carbon / Carbon-Oxygen Lyases - genetics / Carbon-Oxygen Lyases - metabolism / Cell culture / Cellulose / Chromatography / Cleavage / Degradation products / Enzymes / Functionals / Gene cluster / Genes / Genomes / Glucose / Life Sciences / Loci / lyases / Metabolism / Microbial Genetics and Genomics / Microbiology / Microorganisms / multigene family / Oligosaccharides / Paenibacillus / Paenibacillus - enzymology / Paenibacillus - genetics / Paenibacillus - isolation & purification / Paenibacillus - metabolism / Paenibacillus taichungensis / Polysaccharides / Polysaccharides, Bacterial - metabolism / protein synthesis / Protein transport / Proteins / proteome / Proteomes / recombinant proteins / Rheological properties / secretion / signal peptide / species / Utilization / Xanthan / Xanthan gum / Xanthan lyase / Xanthanase / Xanthomonas