Journal Article

Epidemiological and genetic analysis of human group C rotaviruses isolated from outbreaks of acute gastroenteritis in Yokohama, Japan, between 2006 and 2012

Usuku, Shuzo, Kumazaki, Makoto

2014

Overview

Group C rotavirus (GCRV) infection has been described in several parts of the world, predominantly as sporadic cases of acute gastroenteritis. Little is known about the yearly changes in the GCRV strains from diarrheal outbreaks. Stool samples collected from outbreaks of acute gastroenteritis in Yokohama, Japan, between 2006 and 2012 that were negative for norovirus, sapovirus, and group A rotavirus, were screened for GCRV using a reverse passive hemagglutination method. The GCRV strains were characterized by nucleotide sequence and phylogenetic analysis of their VP6, VP7, VP4, and NSP4 genes. Samples from nine of 735 outbreaks in Yokohama (1 %) contained GCRV, and eight of these outbreaks occurred in primary schools. The nucleotide sequences of the strains detected in this study were more closely related to Asian strains than to those from other regions of the world. The nucleotide sequences of the VP7 gene in these nine strains differed, and yearly changes were observed in the amino acid sequences of the VP4 genes. Phylogenetic trees constructed using the nucleotide sequences of the VP6, VP7, VP4, and NSP4 genes showed that sublineage S1 has divided into S1-1 and S1-2 in the VP4 gene only. Our results confirm that the prevalent strains of GCRV change yearly in Yokohama. This is the first study to demonstrate GCRV-associated gastroenteritis outbreaks in Yokohama, Japan.

• Publisher: Springer-Verlag,Springer Vienna,Springer Nature B.V
• Subject: Adolescent / Adult / Aged / Aged, 80 and over / amino acid sequences / Biomedical and Life Sciences / Biomedicine / Child / Child, Preschool / classification / Cluster Analysis / Day care centers / Disease Outbreaks / Elementary schools / epidemiology / Female / Gastroenteritis / Gastroenteritis - epidemiology / Gastroenteritis - virology / Genes / genetic techniques and protocols / genetics / Genotype / Group a rotavirus / Group c rotavirus / hemagglutination / Humans / Infant / Infectious Diseases / isolation & purification / Japan / Japan - epidemiology / Kindergarten / Male / Medical Microbiology / Middle Aged / Molecular Epidemiology / Molecular Sequence Data / Norovirus / nucleotide sequences / Nursing homes / Original Article / Phylogenetics / Phylogeny / Proteins / RNA, Viral / Rotavirus / Rotavirus - classification / Rotavirus - genetics / Rotavirus - isolation & purification / Rotavirus C / Rotavirus Infections / Rotavirus Infections - epidemiology / Rotavirus Infections - virology / Sapovirus / Sequence Analysis, DNA / Virology / Viruses / Young Adult