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Genomic signatures of vegetable and oilseed allopolyploid Brassica juncea and genetic loci controlling the accumulation of glucosinolates
by
Chen, Sheng
, Yang, Jinghua
, Li, Xuming
, Bancroft, Ian
, Zhang, Mingfang
, Wang, Jing
, Lyu, Xiaolong
, Sha, Tongyun
, Zhang, Lili
, He, Hongju
, He, Zhesi
, Gu, Yuanguo
, Li, Zhangping
, Li, Zaiyun
, Hu, Zhongyuan
in
Accumulation
/ Adaptability
/ allopolyploid
/ allopolyploidy
/ Biosynthesis
/ biotechnology
/ Brassica
/ Brassica juncea
/ Chromosomes
/ Copy number
/ copy number variation
/ Crops
/ DNA Copy Number Variations
/ evolution
/ Gene loci
/ Gene sequencing
/ Genetic diversity
/ Genetic Loci
/ genome
/ Genomes
/ Genomics
/ Glucosinolates
/ Mustard Plant - genetics
/ Oils & fats
/ Oilseed crops
/ Oilseeds
/ Polyploidy
/ Regeneration
/ seed oils
/ Seeds
/ Single-nucleotide polymorphism
/ structural variations
/ Subgroups
/ Vegetables
2021
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Genomic signatures of vegetable and oilseed allopolyploid Brassica juncea and genetic loci controlling the accumulation of glucosinolates
by
Chen, Sheng
, Yang, Jinghua
, Li, Xuming
, Bancroft, Ian
, Zhang, Mingfang
, Wang, Jing
, Lyu, Xiaolong
, Sha, Tongyun
, Zhang, Lili
, He, Hongju
, He, Zhesi
, Gu, Yuanguo
, Li, Zhangping
, Li, Zaiyun
, Hu, Zhongyuan
in
Accumulation
/ Adaptability
/ allopolyploid
/ allopolyploidy
/ Biosynthesis
/ biotechnology
/ Brassica
/ Brassica juncea
/ Chromosomes
/ Copy number
/ copy number variation
/ Crops
/ DNA Copy Number Variations
/ evolution
/ Gene loci
/ Gene sequencing
/ Genetic diversity
/ Genetic Loci
/ genome
/ Genomes
/ Genomics
/ Glucosinolates
/ Mustard Plant - genetics
/ Oils & fats
/ Oilseed crops
/ Oilseeds
/ Polyploidy
/ Regeneration
/ seed oils
/ Seeds
/ Single-nucleotide polymorphism
/ structural variations
/ Subgroups
/ Vegetables
2021
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Genomic signatures of vegetable and oilseed allopolyploid Brassica juncea and genetic loci controlling the accumulation of glucosinolates
by
Chen, Sheng
, Yang, Jinghua
, Li, Xuming
, Bancroft, Ian
, Zhang, Mingfang
, Wang, Jing
, Lyu, Xiaolong
, Sha, Tongyun
, Zhang, Lili
, He, Hongju
, He, Zhesi
, Gu, Yuanguo
, Li, Zhangping
, Li, Zaiyun
, Hu, Zhongyuan
in
Accumulation
/ Adaptability
/ allopolyploid
/ allopolyploidy
/ Biosynthesis
/ biotechnology
/ Brassica
/ Brassica juncea
/ Chromosomes
/ Copy number
/ copy number variation
/ Crops
/ DNA Copy Number Variations
/ evolution
/ Gene loci
/ Gene sequencing
/ Genetic diversity
/ Genetic Loci
/ genome
/ Genomes
/ Genomics
/ Glucosinolates
/ Mustard Plant - genetics
/ Oils & fats
/ Oilseed crops
/ Oilseeds
/ Polyploidy
/ Regeneration
/ seed oils
/ Seeds
/ Single-nucleotide polymorphism
/ structural variations
/ Subgroups
/ Vegetables
2021
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Genomic signatures of vegetable and oilseed allopolyploid Brassica juncea and genetic loci controlling the accumulation of glucosinolates
Journal Article
Genomic signatures of vegetable and oilseed allopolyploid Brassica juncea and genetic loci controlling the accumulation of glucosinolates
2021
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Overview
Summary Allopolyploid Brassica juncea crops in Brassicaceae are becoming increasingly revitalized as vegetables and oilseeds owing to wide adaptability and significant economic values. However, the genomic differentiation of diversified vegetables and oilseed B. juncea and the genetic basis underlying glucosinolates accumulation have yet to be elucidated. To address this knowledge gap, we report the sequencing of pairwise genomes of vegetable and oilseed B. juncea at chromosome scale. Comparative genomics analysis unveils panoramic structural variation footprints, particularly the genetic loci of HSP20 and TGA1 associated with abiotic and biotic stresses responses between oilseed and vegetable subgroups. We anchored two major loci of MYB28 (HAG1) orthologues caused by copy number variations on A02 and A09 chromosomes using scored genomic SNPs‐based GWAS that are responsible for seed oil quality‐determining glucosinolates biosynthesis. These findings will provide valuable repertories of polyploidy genomic information enabling polyploidy genome evolution studies and precise genomic selections for crucial traits like functional components of glucosinolates in B. juncea crops and beyond.
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