Journal Article

Standardization of complex biologically derived spectrochemical datasets

Martin, Francis L, Walsh, Michael J, Yong-Guan, Zhu, Zhang Dayi, Martin, Isabelle, Cui, Li, Lima, Kássio M, Paraskevaidi, Maria, Fullwood, Nigel J, Trevisan Júlio, Sreedhar Hari, Martin-Hirsch, Pierre L, Morais Camilo L M

2019

Overview

Spectroscopic techniques such as Fourier-transform infrared (FTIR) spectroscopy are used to study interactions of light with biological materials. This interaction forms the basis of many analytical assays used in disease screening/diagnosis, microbiological studies, and forensic/environmental investigations. Advantages of spectrochemical analysis are its low cost, minimal sample preparation, non-destructive nature and substantially accurate results. However, an urgent need exists for repetition and validation of these methods in large-scale studies and across different research groups, which would bring the method closer to clinical and/or industrial implementation. For this to succeed, it is important to understand and reduce the effect of random spectral alterations caused by inter-individual, inter-instrument and/or inter-laboratory variations, such as variations in air humidity and CO2 levels, and aging of instrument parts. Thus, it is evident that spectral standardization is critical to the widespread adoption of these spectrochemical technologies. By using calibration transfer procedures, in which the spectral response of a secondary instrument is standardized to resemble the spectral response of a primary instrument, different sources of variation can be normalized into a single model using computational-based methods, such as direct standardization (DS) and piecewise direct standardization (PDS); therefore, measurements performed under different conditions can generate the same result, eliminating the need for a full recalibration. Here, we have constructed a protocol for model standardization using different transfer technologies described for FTIR spectrochemical applications. This is a critical step toward the construction of a practical spectrochemical analysis model for daily routine analysis, where uncertain and random variations are present.The aim of this spectral standardization model is to expedite multicenter studies with large numbers of samples. The protocol covers sample preparation, acquisition of FTIR spectra, data preprocessing and model standardization.

• Publisher: Nature Publishing Group
• Subject: Aging / Biological materials / Carbon dioxide / Computer applications / Cost analysis / Forensic science / Fourier transforms / Infrared spectroscopy / Microbiological studies / Sample preparation / Spectra / Spectral sensitivity / Spectrochemical analysis / Standardization / Uncertainty analysis / Variation