Journal Article

Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals

Fan, Danling, Karafiátová, Miroslava, Miao, Jiashun, Li, Wenjun, Lu, Hengyun, Melton, Rachel, Louveau, Thomas, Rey, Maria-Dolores, Huang, Tao, Tian, Qilin, Lu, Ying, Zhao, Qiang, Moore, Graham, Li, Yan, Feng, Qi, Langdon, Tim, Huang, Xuehui, Steuernagel, Burkhard, Liu, Zhenhua, Polturak, Guy, Han, Bin, Reed, James, Xue, Zheyong, Owen, Charlotte, Stephenson, Michael J., Osbourn, Anne, Zhou, Congcong, Zhu, Chuanrang, Wang, Jing, Zhang, Lei, Lu, Yiqi, Martin, Azahara C., Orme, Anastasia, Leveau, Aymeric, Hall, Neil, Wegel, Eva, Vrána, Jan, Casson, Rebecca, Doležel, Jaroslav, Chen, Jiaying, Joynson, Ryan, Zhao, Yan, Hill, Lionel, Wulff, Brande B. H.

2021

Overview

Non-random gene organization in eukaryotes plays a significant role in genome evolution. Here, we investigate the origin of a biosynthetic gene cluster for production of defence compounds in oat—the avenacin cluster. We elucidate the structure and organisation of this 12-gene cluster, characterise the last two missing pathway steps, and reconstitute the entire pathway in tobacco by transient expression. We show that the cluster has formed de novo since the divergence of oats in a subtelomeric region of the genome that lacks homology with other grasses, and that gene order is approximately colinear with the biosynthetic pathway. We speculate that the positioning of the late pathway genes furthest away from the telomere may mitigate against a ‘self-poisoning’ scenario in which toxic intermediates accumulate as a result of telomeric gene deletions. Our investigations reveal a striking example of adaptive evolution underpinned by remarkable genome plasticity. The genomic organization and origin of the avenacin biosynthetic gene cluster remain unknown. Here, the authors assemble the genome of diploid oat Avena strigosa , reveal the structure and organization of the consecutive genes, characterize the last two missing pathway steps, and investigate the origin of the pathway in cereals.

• Publisher: Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
• Subject: 14/32 / 45 / 45/23 / 631/181/2474 / 631/208/212/748 / 631/449/2667 / 631/61/447/8 / 82/80 / Antiinfectives and antibacterials / Antimicrobial agents / Avena - genetics / Avena - metabolism / Avena strigosa / Cereals / Diploids / Disease Resistance - genetics / Divergence / Edible Grain - genetics / Eukaryotes / Evolution / Evolution & development / Evolution, Molecular / Gene order / Genes / Genomes / High-Throughput Nucleotide Sequencing / Homology / Humanities and Social Sciences / In Situ Hybridization, Fluorescence / Intermediates / Metabolic Networks and Pathways - genetics / multidisciplinary / Multigene Family / Nicotiana - metabolism / Repetitive Sequences, Nucleic Acid / RNA-Seq / Saponins - biosynthesis / Saponins - chemistry / Saponins - genetics / Science / Science (multidisciplinary) / Synteny - genetics / Telomere - genetics / Telomeres / Tobacco / Whole Genome Sequencing