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Genome wide study of cysteine rich receptor like proteins in Gossypium sp
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Journal Article
Genome wide study of cysteine rich receptor like proteins in Gossypium sp
2022
Overview
Cysteine-rich receptor-like-kinases (
CRKs
), a transmembrane subfamily of receptor-like kinase, play crucial roles in plant adaptation. As such cotton is the major source of fiber for the textile industry, but environmental stresses are limiting its growth and production. Here, we have performed a deep computational analysis of
CRKs
in five
Gossypium
species, including
G. arboreum
(60 genes)
, G. raimondii
(74 genes)
, G. herbaceum
(65 genes)
, G. hirsutum
(118 genes), and
G. barbadense
(120 genes). All identified CRKs were classified into 11 major classes and 43 subclasses with the finding of several novel CRK-associated domains including
ALMT, FUSC_2, Cript, FYVE,
and
Pkinase
. Of these,
DUF26_DUF26_Pkinase_Tyr
was common and had elevated expression under different biotic and abiotic stresses. Moreover, the 35 land plants comparison identified several new
CRKs
domain-architectures. Likewise, several SNPs and InDels were observed in CLCuD resistant
G. hirsutum
. The miRNA target side prediction and their expression profiling in different tissues predicted
miR172
as a major CRK regulating miR. The expression profiling of
CRKs
identified multiple clusters with co-expression under certain stress conditions. The expression analysis under CLCuD highlighted the role of
GhCRK057, GhCRK059, GhCRK058, and GhCRK081
in resistant accession. Overall, these results provided primary data for future potential functional analysis as well as a reference study for other agronomically important crops.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
