Journal Article

Whole-exome sequencing in UK Biobank reveals rare genetic architecture for depression

Kweon, Hyeokmoon, Lencz, Todd, Lam, Max, Chen, Chia-Yen, Stein, Murray B., Tsai, Ellen A., Huang, Hailiang, Runz, Heiko, Tian, Ruoyu, Liu, Jimmy Z., Singh, Kritika, Gelernter, Joel, Rocha, Daniel B., Chabris, Christopher F., Ge, Tian, Levey, Daniel F.

2024

Overview

Nearly two hundred common-variant depression risk loci have been identified by genome-wide association studies (GWAS). However, the impact of rare coding variants on depression remains poorly understood. Here, we present whole-exome sequencing analyses of depression with seven different definitions based on survey, questionnaire, and electronic health records in 320,356 UK Biobank participants. We showed that the burden of rare damaging coding variants in loss-of-function intolerant genes is significantly associated with risk of depression with various definitions. We compared the rare and common genetic architecture across depression definitions by genetic correlation and showed different genetic relationships between definitions across common and rare variants. In addition, we demonstrated that the effects of rare damaging coding variant burden and polygenic risk score on depression risk are additive. The gene set burden analyses revealed overlapping rare genetic variant components with developmental disorder, autism, and schizophrenia. Our study provides insights into the contribution of rare coding variants, separately and in conjunction with common variants, on depression with various definitions and their genetic relationships with neurodevelopmental disorders. Despite many common genetic variants being linked to depression, the impact of rare coding variants on depression remains largely unknown. Here, the authors perform a whole-exome sequencing study of depression, providing insights into the rare genetic architecture of depression.

• Publisher: Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
• Subject: 45/23 / 631/208/205 / 692/699/476/1414 / Autism / Biobanks / Biological Specimen Banks / Depression - genetics / Electronic health records / Electronic medical records / Exome Sequencing / Genetic diversity / Genetic Predisposition to Disease / Genetic relationship / Genetic variance / Genome-wide association studies / Genome-Wide Association Study / Genomes / Humanities and Social Sciences / Humans / Mental depression / Mental disorders / multidisciplinary / Neural coding / Neurodevelopmental disorders / Risk / Schizophrenia / Science / Science (multidisciplinary) / UK Biobank