Journal Article

Coordination to lanthanide ions distorts binding site conformation in calmodulin

Halling, D. Brent, Aldrich, Richard W., Middendorf, Thomas R., Gonzalez, Andrea, Edington, Sean C., Baiz, Carlos R.

2018

Overview

The Ca2+-sensing protein calmodulin (CaM) is a popular model of biological ion binding since it is both experimentally tractable and essential to survival in all eukaryotic cells. CaM modulates hundreds of target proteins and is sensitive to complex patterns of Ca2+ exposure, indicating that it functions as a sophisticated dynamic transducer rather than a simple on/off switch. Many details of this transduction function are not well understood. Fourier transform infrared (FTIR) spectroscopy, ultrafast 2D infrared (2D IR) spectroscopy, and electronic structure calculations were used to probe interactions between bound metal ions (Ca2+ and several trivalent lanthanide ions) and the carboxylate groups in CaM’s EF-hand ion-coordinating sites. Since Tb3+ is commonly used as a luminescent Ca2+ analog in studies of protein−ion binding, it is important to characterize distinctions between the coordination of Ca2+ and the lanthanides in CaM. Although functional assays indicate that Tb3+ fully activates many Ca2+-dependent proteins, our FTIR spectra indicate that Tb3+, La3+, and Lu3+ disrupt the bidentate coordination geometry characteristic of the CaM binding sites’ strongly conserved position 12 glutamate residue. The 2D IR spectra indicate that, relative to the Ca2+-bound form, lanthanide-bound CaM exhibits greater conformational flexibility and larger structural fluctuations within its binding sites. Time-dependent 2D IR lineshapes indicate that binding sites in Ca2+−CaM occupy well-defined configurations, whereas binding sites in lanthanide-bound-CaM are more disordered. Overall, the results show that binding to lanthanide ions significantly alters the conformation and dynamics of CaM’s binding sites.

• Publisher: National Academy of Sciences
• Subject: Binding Sites / Biological Sciences / Biophysics and Computational Biology / Calcium - chemistry / Calcium - metabolism / Calcium ions / Calcium-binding protein / Calmodulin / Calmodulin - chemistry / Calmodulin - metabolism / Chemical elements / Chemistry / EF-hand / Electronic structure / Fourier transforms / Humans / Infrared spectroscopy / Ions / Lanthanides / Lanthanoid Series Elements - chemistry / Lanthanoid Series Elements - metabolism / Metal ions / Models, Molecular / Physical Sciences / PNAS Plus / Protein Binding / Protein Conformation / Protein Domains / Protein structure / Proteins / Spectroscopy / Time dependence / Variation