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Enzymatic control of cycloadduct conformation ensures reversible 1,3-dipolar cycloaddition in a prFMN-dependent decarboxylase
by
Saaret, Annica
, Marshall, Stephen A.
, Gostimskaya, Irina
, Bailey, Samuel S.
, Kosov, Iaroslav
, Leys, David
, Hay, Sam
, Fisher, Karl
, Payne, Karl A. P.
in
631/45/173
/ 631/535/1266
/ 639/638/77/603
/ Acids
/ Alkenes
/ Alkynes - chemistry
/ Alkynes - metabolism
/ Analytical Chemistry
/ Aromatic compounds
/ Biocatalysis
/ Biochemistry
/ Biosynthesis
/ Carboxy-Lyases - chemistry
/ Carboxy-Lyases - isolation & purification
/ Carboxy-Lyases - metabolism
/ Carboxylation
/ Catalysis
/ Chemistry
/ Chemistry and Materials Science
/ Chemistry/Food Science
/ Cinnamic acid
/ Coenzyme Q
/ Computer applications
/ Conformation
/ Cycloaddition
/ Cycloaddition Reaction
/ Density Functional Theory
/ Enzymes
/ Ferulic acid
/ Flavin mononucleotide
/ Inorganic Chemistry
/ Intermediates
/ Models, Molecular
/ Molecular Conformation
/ Mutagenesis
/ Organic Chemistry
/ Physical Chemistry
/ Propionates - chemistry
/ Propionates - metabolism
/ Ubiquinone
2019
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Enzymatic control of cycloadduct conformation ensures reversible 1,3-dipolar cycloaddition in a prFMN-dependent decarboxylase
by
Saaret, Annica
, Marshall, Stephen A.
, Gostimskaya, Irina
, Bailey, Samuel S.
, Kosov, Iaroslav
, Leys, David
, Hay, Sam
, Fisher, Karl
, Payne, Karl A. P.
in
631/45/173
/ 631/535/1266
/ 639/638/77/603
/ Acids
/ Alkenes
/ Alkynes - chemistry
/ Alkynes - metabolism
/ Analytical Chemistry
/ Aromatic compounds
/ Biocatalysis
/ Biochemistry
/ Biosynthesis
/ Carboxy-Lyases - chemistry
/ Carboxy-Lyases - isolation & purification
/ Carboxy-Lyases - metabolism
/ Carboxylation
/ Catalysis
/ Chemistry
/ Chemistry and Materials Science
/ Chemistry/Food Science
/ Cinnamic acid
/ Coenzyme Q
/ Computer applications
/ Conformation
/ Cycloaddition
/ Cycloaddition Reaction
/ Density Functional Theory
/ Enzymes
/ Ferulic acid
/ Flavin mononucleotide
/ Inorganic Chemistry
/ Intermediates
/ Models, Molecular
/ Molecular Conformation
/ Mutagenesis
/ Organic Chemistry
/ Physical Chemistry
/ Propionates - chemistry
/ Propionates - metabolism
/ Ubiquinone
2019
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Enzymatic control of cycloadduct conformation ensures reversible 1,3-dipolar cycloaddition in a prFMN-dependent decarboxylase
by
Saaret, Annica
, Marshall, Stephen A.
, Gostimskaya, Irina
, Bailey, Samuel S.
, Kosov, Iaroslav
, Leys, David
, Hay, Sam
, Fisher, Karl
, Payne, Karl A. P.
in
631/45/173
/ 631/535/1266
/ 639/638/77/603
/ Acids
/ Alkenes
/ Alkynes - chemistry
/ Alkynes - metabolism
/ Analytical Chemistry
/ Aromatic compounds
/ Biocatalysis
/ Biochemistry
/ Biosynthesis
/ Carboxy-Lyases - chemistry
/ Carboxy-Lyases - isolation & purification
/ Carboxy-Lyases - metabolism
/ Carboxylation
/ Catalysis
/ Chemistry
/ Chemistry and Materials Science
/ Chemistry/Food Science
/ Cinnamic acid
/ Coenzyme Q
/ Computer applications
/ Conformation
/ Cycloaddition
/ Cycloaddition Reaction
/ Density Functional Theory
/ Enzymes
/ Ferulic acid
/ Flavin mononucleotide
/ Inorganic Chemistry
/ Intermediates
/ Models, Molecular
/ Molecular Conformation
/ Mutagenesis
/ Organic Chemistry
/ Physical Chemistry
/ Propionates - chemistry
/ Propionates - metabolism
/ Ubiquinone
2019
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Enzymatic control of cycloadduct conformation ensures reversible 1,3-dipolar cycloaddition in a prFMN-dependent decarboxylase
Journal Article
Enzymatic control of cycloadduct conformation ensures reversible 1,3-dipolar cycloaddition in a prFMN-dependent decarboxylase
2019
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Overview
The UbiD enzyme plays an important role in bacterial ubiquinone (coenzyme Q) biosynthesis. It belongs to a family of reversible decarboxylases that interconvert propenoic or aromatic acids with the corresponding alkenes or aromatic compounds using a prenylated flavin mononucleotide cofactor. This cofactor is suggested to support (de)carboxylation through a reversible 1,3-dipolar cycloaddition process. Here, we report an atomic-level description of the reaction of the UbiD-related ferulic acid decarboxylase with substituted propenoic and propiolic acids (data ranging from 1.01–1.39 Å). The enzyme is only able to couple (de)carboxylation of cinnamic acid-type compounds to reversible 1,3-dipolar cycloaddition, while the formation of dead-end prenylated flavin mononucleotide cycloadducts occurs with distinct propenoic and propiolic acids. The active site imposes considerable strain on covalent intermediates formed with cinnamic and phenylpropiolic acids. Strain reduction through mutagenesis negatively affects catalytic rates with cinnamic acid, indicating a direct link between enzyme-induced strain and catalysis that is supported by computational studies.
The UbiD family of reversible decarboxylases interconvert propenoic or aromatic acids with the corresponding alkenes or aromatic compounds, using a transient 1,3-dipolar cycloaddition between the substrate and the prenylated flavin mononucleotide cofactor. Atomic-resolution crystallography shows targeted destabilization of the intermediate covalent adducts, allowing the enzyme to harness 1,3-dipolar cycloaddition as a readily reversible reaction.
Publisher
Nature Publishing Group UK,Nature Publishing Group
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