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Island Biogeography Reveals the Deep History of SIV

by Coleman, Clint A. , Makuwa, Maria , Honarvar, Shaya , Worobey, Michael , Telfer, Paul , Roques, Pierre , Metzger, Michael J. , Hunter, Meredith , Hearn, Gail , Marx, Preston A. , Souquière, Sandrine , Kazanji, Mirdad , Reed, Patricia , Apetrei, Cristian

in Animal diseases / Animals / bias / Biogeography / Biological and medical sciences / BREVIA / Calibration / Cercopithecidae / Cercopithecidae - virology / Cercopithecus / Cercopithecus - virology / Circulating / Colobus / Colobus - virology / Dating / Equatorial Guinea / Evolution / Evolution, Molecular / Fundamental and applied biological sciences. Psychology / Genes / Genes, pol / Genetic diversity / Genetic Variation / Genetics / Geography / geological eons / Geological time / hosts / Islands / Life Sciences / Mandrillus / Mandrillus - virology / Microbiology / Molecular Sequence Data / Monkeys / Monkeys & apes / nucleotide sequences / Other / Phylogenetics / Phylogeny / phylogeography / Primates / Saturation / Simian Acquired Immunodeficiency Syndrome / Simian Acquired Immunodeficiency Syndrome - virology / Simian immunodeficiency virus / Simian Immunodeficiency Virus - classification / Simian Immunodeficiency Virus - genetics / Simian Immunodeficiency Virus - isolation & purification / Time Factors / Virology / Viruses

2010

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2010

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2010

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Journal Article

Island Biogeography Reveals the Deep History of SIV

Coleman, Clint A.,

Makuwa, Maria,

Honarvar, Shaya,

Worobey, Michael,

Telfer, Paul,

Roques, Pierre,

Metzger, Michael J.,

Hunter, Meredith,

Hearn, Gail,

Marx, Preston A.,

Souquière, Sandrine,

Kazanji, Mirdad,

Reed, Patricia,

Apetrei, Cristian

2010

Overview

Separation of the island of Bioko from West Africa about 10,000 years ago dates the origins of simian immunodeficiency virus. Simian immunodeficiency virus (SIV) lineages have been identified that are endemic to Bioko Island. The time the island formed offers a geological time scale calibration point for dating the most recent common ancestor of SIV. The Bioko viruses cover the whole range of SIV genetic diversity, and each Bioko SIV clade is most closely related to viruses circulating in hosts of the same genus on the African mainland rather than to SIVs of other Bioko species. Our phylogeographic approach establishes that SIV is ancient and at least 32,000 years old. Our conservative calibration point and analyses of gene sequence saturation and dating bias suggest it may be much older.

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Publisher

American Association for the Advancement of Science,The American Association for the Advancement of Science,American Association for the Advancement of Science (AAAS)

Subject

Animal diseases

/ Animals

/ bias

/ Biogeography

/ Biological and medical sciences

/ BREVIA

/ Calibration

/ Cercopithecidae

/ Cercopithecidae - virology

/ Cercopithecus

/ Cercopithecus - virology