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Visualization of multiple alignments, phylogenies and gene family evolution
by
Thompson, Julie
, Barton, Geoffrey J
, Letunic, Ivica
, Creevey, Chris
, Procter, James B
, Jossinet, Fabrice
in
631/114/2184
/ 631/114/739
/ 631/114/794
/ 631/208/212/2304
/ Amino Acid Sequence
/ Analysis
/ Biochemistry, Molecular Biology
/ Bioinformatics
/ Biological Evolution
/ Biological Microscopy
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Evolution
/ Evolutionary biology
/ Genetics
/ Internet
/ Life Sciences
/ Molecular Sequence Data
/ Multigene Family
/ Phylogeny
/ Phylogeny (Botany)
/ Proteins
/ Proteins - chemistry
/ Proteomics
/ Research methodology
/ review-article
/ Scientific imaging
/ Scientists
/ Sequence Alignment
/ Sequence Homology, Amino Acid
/ Software
/ Visualization (Computers)
2010
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Visualization of multiple alignments, phylogenies and gene family evolution
by
Thompson, Julie
, Barton, Geoffrey J
, Letunic, Ivica
, Creevey, Chris
, Procter, James B
, Jossinet, Fabrice
in
631/114/2184
/ 631/114/739
/ 631/114/794
/ 631/208/212/2304
/ Amino Acid Sequence
/ Analysis
/ Biochemistry, Molecular Biology
/ Bioinformatics
/ Biological Evolution
/ Biological Microscopy
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Evolution
/ Evolutionary biology
/ Genetics
/ Internet
/ Life Sciences
/ Molecular Sequence Data
/ Multigene Family
/ Phylogeny
/ Phylogeny (Botany)
/ Proteins
/ Proteins - chemistry
/ Proteomics
/ Research methodology
/ review-article
/ Scientific imaging
/ Scientists
/ Sequence Alignment
/ Sequence Homology, Amino Acid
/ Software
/ Visualization (Computers)
2010
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Visualization of multiple alignments, phylogenies and gene family evolution
by
Thompson, Julie
, Barton, Geoffrey J
, Letunic, Ivica
, Creevey, Chris
, Procter, James B
, Jossinet, Fabrice
in
631/114/2184
/ 631/114/739
/ 631/114/794
/ 631/208/212/2304
/ Amino Acid Sequence
/ Analysis
/ Biochemistry, Molecular Biology
/ Bioinformatics
/ Biological Evolution
/ Biological Microscopy
/ Biological Techniques
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Evolution
/ Evolutionary biology
/ Genetics
/ Internet
/ Life Sciences
/ Molecular Sequence Data
/ Multigene Family
/ Phylogeny
/ Phylogeny (Botany)
/ Proteins
/ Proteins - chemistry
/ Proteomics
/ Research methodology
/ review-article
/ Scientific imaging
/ Scientists
/ Sequence Alignment
/ Sequence Homology, Amino Acid
/ Software
/ Visualization (Computers)
2010
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Visualization of multiple alignments, phylogenies and gene family evolution
Journal Article
Visualization of multiple alignments, phylogenies and gene family evolution
2010
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Overview
Software for visualizing sequence alignments and trees are essential tools for life scientists. In this review, we describe the major features and capabilities of a selection of stand-alone and web-based applications useful when investigating the function and evolution of a gene family. These range from simple viewers, to systems that provide sophisticated editing and analysis functions. We conclude with a discussion of the challenges that these tools now face due to the flood of next generation sequence data and the increasingly complex network of bioinformatics information sources.
Publisher
Nature Publishing Group US,Nature Publishing Group
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