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Automatic identification and characterization of radial files in light microscopy images of wood
by
Jaeger, Marc
, Borianne, Philippe
, Brunel, Guilhem
, Subsol, Gérard
, Caraglio, Yves
in
Abies - anatomy & histology
/ Abies alba
/ Algorithms
/ automatic detection
/ Biodiversity and Ecology
/ Environmental Sciences
/ growth and development
/ Image analysis
/ Image files
/ Image Processing, Computer-Assisted - methods
/ light microscopy
/ Luminous intensity
/ Meliaceae - anatomy & histology
/ Microscopy
/ new methods
/ Pinus - anatomy & histology
/ Pinus canariensis
/ Plant cells
/ Plant growth
/ Reproducibility of Results
/ statistical analysis
/ Surface areas
/ Swietenia
/ TECHNICAL ARTICLE
/ Tracheids
/ Trees
/ Vertices
/ Watersheds
/ Wood
/ Wood - anatomy & histology
2014
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Automatic identification and characterization of radial files in light microscopy images of wood
by
Jaeger, Marc
, Borianne, Philippe
, Brunel, Guilhem
, Subsol, Gérard
, Caraglio, Yves
in
Abies - anatomy & histology
/ Abies alba
/ Algorithms
/ automatic detection
/ Biodiversity and Ecology
/ Environmental Sciences
/ growth and development
/ Image analysis
/ Image files
/ Image Processing, Computer-Assisted - methods
/ light microscopy
/ Luminous intensity
/ Meliaceae - anatomy & histology
/ Microscopy
/ new methods
/ Pinus - anatomy & histology
/ Pinus canariensis
/ Plant cells
/ Plant growth
/ Reproducibility of Results
/ statistical analysis
/ Surface areas
/ Swietenia
/ TECHNICAL ARTICLE
/ Tracheids
/ Trees
/ Vertices
/ Watersheds
/ Wood
/ Wood - anatomy & histology
2014
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Automatic identification and characterization of radial files in light microscopy images of wood
by
Jaeger, Marc
, Borianne, Philippe
, Brunel, Guilhem
, Subsol, Gérard
, Caraglio, Yves
in
Abies - anatomy & histology
/ Abies alba
/ Algorithms
/ automatic detection
/ Biodiversity and Ecology
/ Environmental Sciences
/ growth and development
/ Image analysis
/ Image files
/ Image Processing, Computer-Assisted - methods
/ light microscopy
/ Luminous intensity
/ Meliaceae - anatomy & histology
/ Microscopy
/ new methods
/ Pinus - anatomy & histology
/ Pinus canariensis
/ Plant cells
/ Plant growth
/ Reproducibility of Results
/ statistical analysis
/ Surface areas
/ Swietenia
/ TECHNICAL ARTICLE
/ Tracheids
/ Trees
/ Vertices
/ Watersheds
/ Wood
/ Wood - anatomy & histology
2014
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Automatic identification and characterization of radial files in light microscopy images of wood
Journal Article
Automatic identification and characterization of radial files in light microscopy images of wood
2014
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Overview
Background and AimsAnalysis of anatomical sections of wood provides important information for understanding the secondary growth and development of plants. This study reports on a new method for the automatic detection and characterization of cell files in wood images obtained by light microscopy. To facilitate interpretation of the results, reliability coefficients have been determined, which characterize the files, their cells and their respective measurements.MethodsHistological sections and blocks of the gymnosperms Pinus canariensis, P. nigra and Abies alba were used, together with histological sections of the angiosperm mahogany (Swietenia spp.). Samples were scanned microscopically and mosaic images were built up. After initial processing to reduce noise and enhance contrast, cells were identified using a ‘watershed’ algorithm and then cell files were built up by the successive aggregation of cells taken from progressively enlarged neighbouring regions. Cell characteristics such as thickness and size were calculated, and a method was developed to determine the reliability of the measurements relative to manual methods.Key ResultsImage analysis using this method can be performed in less than 20 s, which compares with a time of approx. 40 min to produce the same results manually. The results are accompanied by a reliability indicator that can highlight specific configurations of cells and also potentially erroneous data.ConclusionsThe method provides a fast, economical and reliable tool for the identification of cell files. The reliability indicator characterizing the files permits quick filtering of data for statistical analysis while also highlighting particular biological configurations present in the wood sections.
Publisher
Oxford University Press,Oxford University Press (OUP)
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