Journal Article

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

Bartczak, Agata M., Ogawa, Shinichiro, Echeverri, Juan, Bader, Gary D., Chung, Sai W., Shao, Zigong, Wilson, Michael D., Ghanekar, Anand, Grant, David, Khuu, Nicholas, MacParland, Sonya A., Seliga, Rebecca K., Selzner, Markus, Ma, Xue-Zhong, Ogawa, Mina, Sapisochin, Gonzalo, McGilvray, Ian D., Liu, Lewis Y., Greig, Paul, Linares, Ivan, Winegarden, Neil, Lee, Elizabeth, Manuel, Justin, Liu, Jeff C., Gupta, Rahul, Camat, Damra, Selzner, Nazia, Keller, Gordon, Gage, Blair K., Adeyi, Oyedele, Innes, Brendan T., Cheng, Michael L., Fish, Jason E.

2018

Overview

The liver is the largest solid organ in the body and is critical for metabolic and immune functions. However, little is known about the cells that make up the human liver and its immune microenvironment. Here we report a map of the cellular landscape of the human liver using single-cell RNA sequencing. We provide the transcriptional profiles of 8444 parenchymal and non-parenchymal cells obtained from the fractionation of fresh hepatic tissue from five human livers. Using gene expression patterns, flow cytometry, and immunohistochemical examinations, we identify 20 discrete cell populations of hepatocytes, endothelial cells, cholangiocytes, hepatic stellate cells, B cells, conventional and non-conventional T cells, NK-like cells, and distinct intrahepatic monocyte/macrophage populations. Together, our study presents a comprehensive view of the human liver at single-cell resolution that outlines the characteristics of resident cells in the liver, and in particular provides a map of the human hepatic immune microenvironment. The development of single cell RNA sequencing technologies has been instrumental in advancing our understanding of tissue biology. Here, MacParland et al. performed single cell RNA sequencing of human liver samples, and identify distinct populations of intrahepatic macrophages that may play specific roles in liver disease.

• Publisher: Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
• Subject: 13/31 / 13/51 / 38/39 / 45/91 / 631/1647/514/1949 / 692/4020/4021/288 / B-Lymphocytes - cytology / B-Lymphocytes - metabolism / Endothelial cells / Endothelial Cells - cytology / Endothelial Cells - metabolism / Flow cytometry / Fractionation / Gene expression / Gene flow / Gene sequencing / Hepatic Stellate Cells - cytology / Hepatic Stellate Cells - metabolism / Hepatocytes / Hepatocytes - cytology / Hepatocytes - metabolism / Humanities and Social Sciences / Humans / Liver / Liver - cytology / Liver - metabolism / Lymphocytes / Lymphocytes B / Lymphocytes T / Macrophages / Macrophages - cytology / Macrophages - metabolism / Monocytes / Monocytes - cytology / Monocytes - metabolism / multidisciplinary / Population studies / Populations / Ribonucleic acid / RNA / Science / Science (multidisciplinary) / Sequence Analysis, RNA / Stellate cells / Transcription