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DNA barcode for land plants

by van AlphenStahl, Jonathan , Ratnasingham, Sujeevan , Schneider, Harald , van den Berg, Cassio , Kress, W. John , Lahaye, Renaud , Barrett, Spencer C.H , van der Bank, Michelle , Chase, Mark W , Madriñán, Santiago , Spouge, John L , Cowan, Robyn S , Chacón, Juliana , Savolainen, Vincent , Conrad, Ferozah , Meusnier, Isabelle , Percy, Diana M , Husband, Brian C , Seberg, Ole , Wilkinson, Michael J , James, Karen E , Park, Chong-Wook , Hollingsworth, Michelle L , Graham, Sean W , Little, Damon P , Erickson, David L , Kim, Jung Sung , Cameron, Kenneth M , Petersen, Gitte , Forrest, Laura L , Clark, Alexandra , Hedderson, Terry A.J , Hollingsworth, Peter M , Clarkson, James J , Maurin, Olivier , Bogarin, Diego , Lee, Hae-Lim , Ford, Caroline S , Salazar, Gerardo A , Kim, Young-Dong , Long, David G , Hajibabaei, Mehrdad , Kesanakurti, Prasad R , Carine, Mark , Kim, Ki-Joong , Devey, Dion S , Burgess, Kevin S , Richardson, James E , Kelly, Laura J , Newmaster, Steven G , Fazekas, Aron J , Yi, Dong-Keun

in Angiosperms / Bar codes / Biological Sciences / chloroplast DNA / Cryptogams / Deoxyribonucleic acid / DNA / DNA barcodes / DNA barcoding / DNA, Plant - chemistry / Electronic Data Processing / Flowers & plants / Gene loci / Genes / Genetic loci / genetic techniques and protocols / loci / matK gene / molecular systematics / Nonnative species / plant genetics / Plants / Plants - classification / Plants - genetics / Plastids / rbcL gene / Ribulose-Bisphosphate Carboxylase - genetics / Sequencing / Species / Universality

2009

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DNA barcode for land plants

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2009

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Journal Article

DNA barcode for land plants

van AlphenStahl, Jonathan,

Ratnasingham, Sujeevan,

Schneider, Harald,

van den Berg, Cassio,

Kress, W. John,

Lahaye, Renaud,

Barrett, Spencer C.H,

van der Bank, Michelle,

Chase, Mark W,

Madriñán, Santiago,

Spouge, John L,

Cowan, Robyn S,

Chacón, Juliana,

Savolainen, Vincent,

Conrad, Ferozah,

Meusnier, Isabelle,

Percy, Diana M,

Husband, Brian C,

Seberg, Ole,

Wilkinson, Michael J,

James, Karen E,

Park, Chong-Wook,

Hollingsworth, Michelle L,

Graham, Sean W,

Little, Damon P,

Erickson, David L,

Kim, Jung Sung,

Cameron, Kenneth M,

Petersen, Gitte,

Forrest, Laura L,

Clark, Alexandra,

Hedderson, Terry A.J,

Hollingsworth, Peter M,

Clarkson, James J,

Maurin, Olivier,

Bogarin, Diego,

Lee, Hae-Lim,

Ford, Caroline S,

Salazar, Gerardo A,

Kim, Young-Dong,

Long, David G,

Hajibabaei, Mehrdad,

Kesanakurti, Prasad R,

Carine, Mark,

Kim, Ki-Joong,

Devey, Dion S,

Burgess, Kevin S,

Richardson, James E,

Kelly, Laura J,

Newmaster, Steven G,

Fazekas, Aron J,

Yi, Dong-Keun

2009

Overview

DNA barcoding involves sequencing a standard region of DNA as a tool for species identification. However, there has been no agreement on which region(s) should be used for barcoding land plants. To provide a community recommendation on a standard plant barcode, we have compared the performance of 7 leading candidate plastid DNA regions (atpF-atpH spacer, matK gene, rbcL gene, rpoB gene, rpoC1 gene, psbK-psbI spacer, and trnH-psbA spacer). Based on assessments of recoverability, sequence quality, and levels of species discrimination, we recommend the 2-locus combination of rbcL+matK as the plant barcode. This core 2-locus barcode will provide a universal framework for the routine use of DNA sequence data to identify specimens and contribute toward the discovery of overlooked species of land plants.

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Publisher

National Academy of Sciences,National Acad Sciences

Subject

Angiosperms

/ Bar codes

/ Biological Sciences

/ chloroplast DNA

/ Cryptogams

/ Deoxyribonucleic acid

/ DNA