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A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation
by
Chan, Ho Man
, Remillard, David I.
, Bradner, James E.
, Cassel, Seth H.
, McKenzie, Zachary M.
, Gray, Nathanael S.
, Zhou, Qianhe
, Lareau, Caleb A.
, McBride, Matthew J.
, Pan, Joshua
, D’Avino, Andrew R.
, Soares, Luis M. M.
, Fortoul, Nora
, Kadoch, Cigall
, Zullow, Hayley J.
, Michel, Brittany C.
, Mashtalir, Nazar
, Valencia, Alfredo M.
, Bocker, Michael
in
13/89
/ 38/91
/ 45/15
/ 45/41
/ 631/208/176
/ 631/208/68/2486
/ 631/45/612/100/102
/ 692/699/67
/ 82/58
/ 82/83
/ Assemblies
/ Biomedical and Life Sciences
/ Cancer
/ Cancer cells
/ Cancer Research
/ Care and treatment
/ Cell Biology
/ Cell Line, Tumor
/ Cell proliferation
/ Cell Proliferation - genetics
/ Chromatin
/ Chromatin - genetics
/ Chromatin - metabolism
/ Chromatin Assembly and Disassembly - genetics
/ Chromatin remodeling
/ Chromosomal Proteins, Non-Histone - genetics
/ Chromosomal Proteins, Non-Histone - metabolism
/ Depletion
/ Developmental Biology
/ Gene expression
/ Genes
/ Genetic aspects
/ HEK293 Cells
/ Humans
/ Life Sciences
/ Mutation
/ Nuclear Proteins - genetics
/ Nuclear Proteins - metabolism
/ Organic chemistry
/ Perturbation
/ Promoter Regions, Genetic - genetics
/ Rhabdoid Tumor - genetics
/ Rhabdoid Tumor - metabolism
/ RNA Interference
/ Sarcoma
/ Sarcoma, Synovial - genetics
/ Sarcoma, Synovial - metabolism
/ Stem Cells
/ SWI/SNF complex
/ Synovial sarcoma
/ Therapeutic applications
/ Transcription Factors - genetics
/ Transcription Factors - metabolism
/ Tumors
2018
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A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation
by
Chan, Ho Man
, Remillard, David I.
, Bradner, James E.
, Cassel, Seth H.
, McKenzie, Zachary M.
, Gray, Nathanael S.
, Zhou, Qianhe
, Lareau, Caleb A.
, McBride, Matthew J.
, Pan, Joshua
, D’Avino, Andrew R.
, Soares, Luis M. M.
, Fortoul, Nora
, Kadoch, Cigall
, Zullow, Hayley J.
, Michel, Brittany C.
, Mashtalir, Nazar
, Valencia, Alfredo M.
, Bocker, Michael
in
13/89
/ 38/91
/ 45/15
/ 45/41
/ 631/208/176
/ 631/208/68/2486
/ 631/45/612/100/102
/ 692/699/67
/ 82/58
/ 82/83
/ Assemblies
/ Biomedical and Life Sciences
/ Cancer
/ Cancer cells
/ Cancer Research
/ Care and treatment
/ Cell Biology
/ Cell Line, Tumor
/ Cell proliferation
/ Cell Proliferation - genetics
/ Chromatin
/ Chromatin - genetics
/ Chromatin - metabolism
/ Chromatin Assembly and Disassembly - genetics
/ Chromatin remodeling
/ Chromosomal Proteins, Non-Histone - genetics
/ Chromosomal Proteins, Non-Histone - metabolism
/ Depletion
/ Developmental Biology
/ Gene expression
/ Genes
/ Genetic aspects
/ HEK293 Cells
/ Humans
/ Life Sciences
/ Mutation
/ Nuclear Proteins - genetics
/ Nuclear Proteins - metabolism
/ Organic chemistry
/ Perturbation
/ Promoter Regions, Genetic - genetics
/ Rhabdoid Tumor - genetics
/ Rhabdoid Tumor - metabolism
/ RNA Interference
/ Sarcoma
/ Sarcoma, Synovial - genetics
/ Sarcoma, Synovial - metabolism
/ Stem Cells
/ SWI/SNF complex
/ Synovial sarcoma
/ Therapeutic applications
/ Transcription Factors - genetics
/ Transcription Factors - metabolism
/ Tumors
2018
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A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation
by
Chan, Ho Man
, Remillard, David I.
, Bradner, James E.
, Cassel, Seth H.
, McKenzie, Zachary M.
, Gray, Nathanael S.
, Zhou, Qianhe
, Lareau, Caleb A.
, McBride, Matthew J.
, Pan, Joshua
, D’Avino, Andrew R.
, Soares, Luis M. M.
, Fortoul, Nora
, Kadoch, Cigall
, Zullow, Hayley J.
, Michel, Brittany C.
, Mashtalir, Nazar
, Valencia, Alfredo M.
, Bocker, Michael
in
13/89
/ 38/91
/ 45/15
/ 45/41
/ 631/208/176
/ 631/208/68/2486
/ 631/45/612/100/102
/ 692/699/67
/ 82/58
/ 82/83
/ Assemblies
/ Biomedical and Life Sciences
/ Cancer
/ Cancer cells
/ Cancer Research
/ Care and treatment
/ Cell Biology
/ Cell Line, Tumor
/ Cell proliferation
/ Cell Proliferation - genetics
/ Chromatin
/ Chromatin - genetics
/ Chromatin - metabolism
/ Chromatin Assembly and Disassembly - genetics
/ Chromatin remodeling
/ Chromosomal Proteins, Non-Histone - genetics
/ Chromosomal Proteins, Non-Histone - metabolism
/ Depletion
/ Developmental Biology
/ Gene expression
/ Genes
/ Genetic aspects
/ HEK293 Cells
/ Humans
/ Life Sciences
/ Mutation
/ Nuclear Proteins - genetics
/ Nuclear Proteins - metabolism
/ Organic chemistry
/ Perturbation
/ Promoter Regions, Genetic - genetics
/ Rhabdoid Tumor - genetics
/ Rhabdoid Tumor - metabolism
/ RNA Interference
/ Sarcoma
/ Sarcoma, Synovial - genetics
/ Sarcoma, Synovial - metabolism
/ Stem Cells
/ SWI/SNF complex
/ Synovial sarcoma
/ Therapeutic applications
/ Transcription Factors - genetics
/ Transcription Factors - metabolism
/ Tumors
2018
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A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation
Journal Article
A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation
2018
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Overview
Mammalian SWI/SNF chromatin remodelling complexes exist in three distinct, final-form assemblies: canonical BAF (cBAF), PBAF and a newly characterized non-canonical complex (ncBAF). However, their complex-specific targeting on chromatin, functions and roles in disease remain largely undefined. Here, we comprehensively mapped complex assemblies on chromatin and found that ncBAF complexes uniquely localize to CTCF sites and promoters. We identified ncBAF subunits as synthetic lethal targets specific to synovial sarcoma and malignant rhabdoid tumours, which both exhibit cBAF complex (SMARCB1 subunit) perturbation. Chemical and biological depletion of the ncBAF subunit, BRD9, rapidly attenuates synovial sarcoma and malignant rhabdoid tumour cell proliferation. Importantly, in cBAF-perturbed cancers, ncBAF complexes maintain gene expression at retained CTCF-promoter sites and function in a manner distinct from fusion oncoprotein-bound complexes. Together, these findings unmask the unique targeting and functional roles of ncBAF complexes and present new cancer-specific therapeutic targets.
Michel et al. report unique localization of non-canonical BAF to CTCF sites and promoters, which confers synthetic lethality in canonical BAF-perturbed synovial sarcoma and malignant rhabdoid tumour cells.
Publisher
Nature Publishing Group UK,Nature Publishing Group
Subject
/ 38/91
/ 45/15
/ 45/41
/ 82/58
/ 82/83
/ Biomedical and Life Sciences
/ Cancer
/ Cell Proliferation - genetics
/ Chromatin Assembly and Disassembly - genetics
/ Chromosomal Proteins, Non-Histone - genetics
/ Chromosomal Proteins, Non-Histone - metabolism
/ Genes
/ Humans
/ Mutation
/ Nuclear Proteins - metabolism
/ Promoter Regions, Genetic - genetics
/ Sarcoma
/ Sarcoma, Synovial - genetics
/ Sarcoma, Synovial - metabolism
/ Transcription Factors - genetics
/ Transcription Factors - metabolism
/ Tumors
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