Journal Article

ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network

Engleman, Edgar, Atallah, Waleed, Mallick, Parag, Hiam, Kamir J., Atallah, Michelle B., Boyce, Hunter, Hori, Michelle, Tandon, Varun, Spitzer, Matthew H.

2020

Overview

Background While technological advances have made it possible to profile the immune system at high resolution, translating high-throughput data into knowledge of immune mechanisms has been challenged by the complexity of the interactions underlying immune processes. Tools to explore the immune network are critical for better understanding the multi-layered processes that underlie immune function and dysfunction, but require a standardized network map of immune interactions. To facilitate this we have developed ImmunoGlobe, a manually curated intercellular immune interaction network extracted from Janeway’s Immunobiology textbook. Results ImmunoGlobe is the first graphical representation of the immune interactome, and is comprised of 253 immune system components and 1112 unique immune interactions with detailed functional and characteristic annotations. Analysis of this network shows that it recapitulates known features of the human immune system and can be used uncover novel multi-step immune pathways, examine species-specific differences in immune processes, and predict the response of immune cells to stimuli. ImmunoGlobe is publicly available through a user-friendly interface at www.immunoglobe.org and can be downloaded as a computable graph and network table. Conclusion While the fields of proteomics and genomics have long benefited from network analysis tools, no such tool yet exists for immunology. ImmunoGlobe provides a ground truth immune interaction network upon which such tools can be built. These tools will allow us to predict the outcome of complex immune interactions, providing mechanistic insight that allows us to precisely modulate immune responses in health and disease.

• Publisher: BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
• Subject: Algorithms / Analysis / Animals / Annotations / Antibodies / Antigens / Bioinformatics / Biomedical and Life Sciences / Cell Communication / Complexity / Computational Biology/Bioinformatics / Computer Appl. in Life Sciences / Cytokines / Data Curation / Extracellular Space - metabolism / Gene expression / Graphical representations / Ground truth / Humans / Immune network analysis / Immune response / Immune system / Immune System - metabolism / Immunobiology / Immunology / Innovations / Life Sciences / Medical research / Mice / Microarrays / Models, Immunological / Multilayers / Network analysis / Network management services / Networks analysis / Protein Interaction Maps / Protein networks / Proteomics / Research Article / Researchers / Software / Systems Biology / Systems immunology