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Harmony-based data integration for distributed single-cell multi-omics data
by
Chen, Wei
, Tang, Lu
, Tao, Shiyue
, Rong, Ziqi
, Hu, Haoran
, Yuan, Ruizhi
, Liu, Tianhao
in
Algorithms
/ Analysis
/ Biology and Life Sciences
/ Brain research
/ Collaboration
/ Computational biology
/ Computational Biology - methods
/ Computer and Information Sciences
/ Data integration
/ Datasets
/ Electronic data processing
/ Engineering and Technology
/ Federated learning
/ Genomics
/ Genomics - methods
/ Geospatial data
/ Humans
/ Information Dissemination - methods
/ Information sharing
/ Integration
/ Machine learning
/ Medicine and Health Sciences
/ Methods
/ Multiomics
/ Performance evaluation
/ Physical Sciences
/ Privacy
/ Research and Analysis Methods
/ Single-Cell Analysis - methods
/ Single-Cell Analysis - statistics & numerical data
/ Social Sciences
/ Tissues
2025
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Harmony-based data integration for distributed single-cell multi-omics data
by
Chen, Wei
, Tang, Lu
, Tao, Shiyue
, Rong, Ziqi
, Hu, Haoran
, Yuan, Ruizhi
, Liu, Tianhao
in
Algorithms
/ Analysis
/ Biology and Life Sciences
/ Brain research
/ Collaboration
/ Computational biology
/ Computational Biology - methods
/ Computer and Information Sciences
/ Data integration
/ Datasets
/ Electronic data processing
/ Engineering and Technology
/ Federated learning
/ Genomics
/ Genomics - methods
/ Geospatial data
/ Humans
/ Information Dissemination - methods
/ Information sharing
/ Integration
/ Machine learning
/ Medicine and Health Sciences
/ Methods
/ Multiomics
/ Performance evaluation
/ Physical Sciences
/ Privacy
/ Research and Analysis Methods
/ Single-Cell Analysis - methods
/ Single-Cell Analysis - statistics & numerical data
/ Social Sciences
/ Tissues
2025
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Do you wish to request the book?
Harmony-based data integration for distributed single-cell multi-omics data
by
Chen, Wei
, Tang, Lu
, Tao, Shiyue
, Rong, Ziqi
, Hu, Haoran
, Yuan, Ruizhi
, Liu, Tianhao
in
Algorithms
/ Analysis
/ Biology and Life Sciences
/ Brain research
/ Collaboration
/ Computational biology
/ Computational Biology - methods
/ Computer and Information Sciences
/ Data integration
/ Datasets
/ Electronic data processing
/ Engineering and Technology
/ Federated learning
/ Genomics
/ Genomics - methods
/ Geospatial data
/ Humans
/ Information Dissemination - methods
/ Information sharing
/ Integration
/ Machine learning
/ Medicine and Health Sciences
/ Methods
/ Multiomics
/ Performance evaluation
/ Physical Sciences
/ Privacy
/ Research and Analysis Methods
/ Single-Cell Analysis - methods
/ Single-Cell Analysis - statistics & numerical data
/ Social Sciences
/ Tissues
2025
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Harmony-based data integration for distributed single-cell multi-omics data
Journal Article
Harmony-based data integration for distributed single-cell multi-omics data
2025
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Overview
Large-scale single-cell projects generate rapidly growing datasets, but downstream analysis is often confounded by data sources, requiring data integration methods to do correction. Existing data integration methods typically require data centralization, raising privacy and security concerns. Here, we introduce Federated Harmony, a novel method combining properties of federated learning with Harmony algorithm to integrate decentralized omics data. This approach preserves privacy by avoiding raw data sharing while maintaining integration performance comparable to Harmony. Experiments on various types of single-cell data showcase superior results, highlighting a novel data integration approach for distributed multi-omics data without compromising data privacy or analytical performance.
Publisher
Public Library of Science,PLOS,Public Library of Science (PLoS)
Subject
/ Analysis
/ Computational Biology - methods
/ Computer and Information Sciences
/ Datasets
/ Genomics
/ Humans
/ Information Dissemination - methods
/ Medicine and Health Sciences
/ Methods
/ Privacy
/ Research and Analysis Methods
/ Single-Cell Analysis - methods
/ Single-Cell Analysis - statistics & numerical data
/ Tissues
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