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Deep semi-supervised learning for brain tumor classification
by
Yang, Jie
, Gu, Irene Yu-Hua
, Jakola, Asgeir Store
, Ge, Chenjie
in
Analysis
/ Brain
/ Brain cancer
/ Brain slice preparation
/ Brain tumors
/ Cancer and Oncology
/ Cancer och onkologi
/ Classification
/ Datasets
/ Deep learning
/ Glioma
/ Gliomas
/ Grading
/ Image classification
/ Imaging
/ Kirurgi
/ Labels
/ Machine learning
/ Magnetic resonance imaging
/ Medicine
/ Medicine & Public Health
/ Molecular-based brain tumor classification
/ MRI
/ Mutation
/ Neuroimaging
/ Propagation
/ Radiologi och bildbehandling
/ Radiology
/ Radiology and Medical Imaging
/ Semi-supervised learning
/ Surgery
/ Technical Advance
/ Tumors
2020
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Deep semi-supervised learning for brain tumor classification
by
Yang, Jie
, Gu, Irene Yu-Hua
, Jakola, Asgeir Store
, Ge, Chenjie
in
Analysis
/ Brain
/ Brain cancer
/ Brain slice preparation
/ Brain tumors
/ Cancer and Oncology
/ Cancer och onkologi
/ Classification
/ Datasets
/ Deep learning
/ Glioma
/ Gliomas
/ Grading
/ Image classification
/ Imaging
/ Kirurgi
/ Labels
/ Machine learning
/ Magnetic resonance imaging
/ Medicine
/ Medicine & Public Health
/ Molecular-based brain tumor classification
/ MRI
/ Mutation
/ Neuroimaging
/ Propagation
/ Radiologi och bildbehandling
/ Radiology
/ Radiology and Medical Imaging
/ Semi-supervised learning
/ Surgery
/ Technical Advance
/ Tumors
2020
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Do you wish to request the book?
Deep semi-supervised learning for brain tumor classification
by
Yang, Jie
, Gu, Irene Yu-Hua
, Jakola, Asgeir Store
, Ge, Chenjie
in
Analysis
/ Brain
/ Brain cancer
/ Brain slice preparation
/ Brain tumors
/ Cancer and Oncology
/ Cancer och onkologi
/ Classification
/ Datasets
/ Deep learning
/ Glioma
/ Gliomas
/ Grading
/ Image classification
/ Imaging
/ Kirurgi
/ Labels
/ Machine learning
/ Magnetic resonance imaging
/ Medicine
/ Medicine & Public Health
/ Molecular-based brain tumor classification
/ MRI
/ Mutation
/ Neuroimaging
/ Propagation
/ Radiologi och bildbehandling
/ Radiology
/ Radiology and Medical Imaging
/ Semi-supervised learning
/ Surgery
/ Technical Advance
/ Tumors
2020
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Deep semi-supervised learning for brain tumor classification
Journal Article
Deep semi-supervised learning for brain tumor classification
2020
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Overview
Background
This paper addresses issues of brain tumor, glioma, classification from four modalities of Magnetic Resonance Image (MRI) scans (i.e., T1 weighted MRI, T1 weighted MRI with contrast-enhanced, T2 weighted MRI and FLAIR). Currently, many available glioma datasets often contain some unlabeled brain scans, and many datasets are moderate in size.
Methods
We propose to exploit deep semi-supervised learning to make full use of the unlabeled data. Deep CNN features were incorporated into a new graph-based semi-supervised learning framework for learning the labels of the unlabeled data, where a new 3D-2D consistent constraint is added to make consistent classifications for the 2D slices from the same 3D brain scan. A deep-learning classifier is then trained to classify different glioma types using both labeled and unlabeled data with estimated labels. To alleviate the overfitting caused by moderate-size datasets, synthetic MRIs generated by Generative Adversarial Networks (GANs) are added in the training of CNNs.
Results
The proposed scheme has been tested on two glioma datasets, TCGA dataset for IDH-mutation prediction (molecular-based glioma subtype classification) and MICCAI dataset for glioma grading. Our results have shown good performance (with test accuracies 86.53% on TCGA dataset and 90.70% on MICCAI dataset).
Conclusions
The proposed scheme is effective for glioma IDH-mutation prediction and glioma grading, and its performance is comparable to the state-of-the-art.
Publisher
BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
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