Journal Article

Pathway crosstalk between the central metabolic and heme biosynthetic pathways in Phanerochaete chrysosporium

Kato, Hiroyuki, Tsurigami, Ryoga, Wariishi, Hiroyuki, Shimizu, Motoyuki, Miura, Daisuke

2024

Overview

A comprehensive analysis to survey heme-binding proteins produced by the white-rot fungus Phanerochaete chrysosporium was achieved using a biotinylated heme–streptavidin beads system. Mitochondrial citrate synthase (PcCS), glyceraldehyde 3-phosphate dehydrogenase (PcGAPDH), and 2-Cys thioredoxin peroxidase (mammalian HBP23 homolog) were identified as putative heme-binding proteins. Among these, PcCS and PcGAPDH were further characterized using heterologously expressed recombinant proteins . Difference spectra of PcCS titrated with hemin exhibited an increase in the Soret absorbance at 414 nm, suggesting that the axial ligand of the heme is a His residue. The activity of PcCS was strongly inhibited by hemin with Ki oxaloacetate of 8.7 μM and Ki acetyl-CoA of 5.8 μM. Since the final step of heme biosynthesis occurred at the mitochondrial inner membrane, the inhibition of PcCS by heme is thought to be a physiological event. The inhibitory mode of the heme was similar to that of CoA analogues, suggesting that heme binds to PcCS at His 347 at the AcCoA–CoA binding site, which was supported by the homology model of PcCS. PcGAPDH was also inhibited by heme, with a lower concentration than that for PcCS. This might be caused by the different location of these enzymes. From the integration of these phenomena, it was concluded that metabolic regulations by heme in the central metabolic and heme synthetic pathways occurred in the mitochondria and cytosol. This novel pathway crosstalk between the central metabolic and heme biosynthetic pathways, via a heme molecule, is important in regulating the metabolic balance (heme synthesis, ATP synthesis, flux balance of the tricarboxylic acid (TCA) cycle and cellular redox balance (NADPH production) during fungal aromatic degradation. Key points • A comprehensive survey of heme-binding proteins in P. chrysosporium was achieved. • Several heme-binding proteins including CS and GAPDH were identified. • A novel metabolic regulation by heme in the central metabolic pathways was found.

• Publisher: Springer Berlin Heidelberg,Springer,Springer Nature B.V
• Subject: absorbance / acetyl coenzyme A / Animals / Basidiomycota / Binding proteins / Binding sites / Biodegradation / Biomedical and Life Sciences / Biosynthesis / Biosynthetic Pathways / Biotechnologically Relevant Enzymes and Proteins / Biotechnology / citrate (si)-synthase / Cytosol / Glyceraldehyde-3-phosphate dehydrogenase / Heme / Heme-Binding Proteins / Hemin / Homology / Life Sciences / ligands / Mammals / Metabolic pathways / Metabolism / Microbial Genetics and Genomics / Microbial metabolism / Microbiological research / Microbiology / Mitochondria / oxaloacetic acid / Peroxidase / peroxiredoxin / Phanerochaete - genetics / Phanerochaete chrysosporium / Physiological aspects / Proteins / Streptavidin / Surveys / Thioredoxin / Thioredoxin peroxidase / Tricarboxylic acid cycle / White rot / White rot fungi