Journal Article

Robust circulating microRNA signature for the diagnosis and early detection of pancreatobiliary cancer

Takizawa, Satoko, Yoshida, Hitoshi, Nomoto, Tomohiro, Ueno, Makoto, Nakata, Kohei, Nakamura, Masafumi, Takahashi, Kenji, Kuwahara, Takamichi, Ikeda, Masafumi, Iwamoto, Hidetaka, Matsunaga, Yutaro, Sudo, Hiroko, Miki, Ikuya, Mitsunaga, Shuichi, Hara, Kazuo, Hatano, Etsuro, Shimizu, Akinori, Iwama, Hideaki, Kobayashi, Satoshi, Takayama, Yukiko, Ochiai, Atsushi, Hanada, Keiji, Tsuda, Masahiro

2025

Overview

Background A new circulating biomarker superior to carbohydrate antigen 19–9 (CA19-9) is needed for diagnosing pancreatobiliary cancer (PBca). The aim of this study was to identify serum microRNA (miRNA) signatures comprising reproducible and disease-related miRNAs. Methods This multicenter study involved patients with treatment-naïve PBca and healthy participants. The optimized serum processing conditions were evaluated using t -distributed stochastic neighbor embedding ( t -SNE) visualization. Serum miRNA candidates for disease association were selected using weighted gene coexpression network analysis (WGCNA). A miRNA signature combining multiple serum miRNAs was tested in exploratory, validation, and independent validation sets. The synthesis and secretion of diagnostic miRNAs were evaluated using human pancreatic cancer cells. Results In total, 284 (150 healthy and 134 PBca) of 827 serum samples were processed within 2 h of blood collection before freezing, distributed in the same area as that in the t -SNE map, and assigned to an exploratory set. The 193 optimized samples were assigned to either the validation (50 healthy, 47 PBca) or independent validation (50 healthy, 46 PBca) set. Index-1, a combination of five serum miRNAs (hsa-miR-1343-5p, hsa-miR-4632-5p, hsa-miR-4665-5p, hsa-miR-665, and hsa-miR-6803-5p) with disease association in WGCNA, showed a sensitivity and specificity of > 80% and an AUC outperforming that of CA19-9 in the exploratory, validation, and independent validation sets. The AUC of Index-1 was superior to that of CA19-9 (0.856 vs. 0.649, p  = 0.038) for detecting T1 tumors. miR-665, a component of Index-1, was expressed in human pancreatic cancer cells, and its transfection inhibited cell growth. Conclusions The serum miRNA signature Index-1 is useful for detecting PBca and could facilitate the early diagnosis of PBca. These findings can help improve clinical PBca detection by providing an optimized biomarker that overcomes the limitations of the current standard.

• Publisher: BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
• Subject: Adult / Aged / Biliary Tract Neoplasms - blood / Biliary Tract Neoplasms - diagnosis / Biliary Tract Neoplasms - genetics / Biomarker / Biomarkers / Biomarkers, Tumor - blood / Biomarkers, Tumor - genetics / Biomedicine / Cancer / Carbohydrates / Case-Control Studies / Circulating microRNA / Circulating MicroRNA - blood / Circulating MicroRNA - genetics / Development and progression / Diagnosis / Disease / Early Detection of Cancer - methods / Embedding / Female / Freezing / Genetic aspects / Health aspects / Humans / Male / Medical diagnosis / Medicine / Medicine & Public Health / MicroRNA / MicroRNAs / MicroRNAs - blood / Middle Aged / miRNA / Network analysis / Pancreatic cancer / Pancreatic Neoplasms - blood / Pancreatic Neoplasms - diagnosis / Pancreatic Neoplasms - genetics / Pancreatobiliary cancer / Physiological aspects / Ribonucleic acid / RNA / Sialyl Lewis a antigen / Transfection / Tumors