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Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation
by
Merkl, Rainer
, Plach, Maximilian G.
, Sterner, Reinhard
, Reisinger, Bernd
in
Actinobacteria - enzymology
/ Amino Acid Sequence
/ Biology and Life Sciences
/ Biosynthesis
/ Catalysis
/ Catalytic Domain - genetics
/ Cloning
/ Computer and Information Sciences
/ Enzymes
/ Evolution, Molecular
/ Gene expression
/ Genes
/ Genetic aspects
/ Genomes
/ Histidine - biosynthesis
/ Histidine - genetics
/ Isomerases - chemistry
/ Isomerases - genetics
/ Metabolism
/ Microbial colonies
/ Observations
/ Phylogenetics
/ Protein Structure, Secondary
/ Proteobacteria - enzymology
/ Research and Analysis Methods
/ Substrate Specificity
/ Trees
/ Tryptophan - biosynthesis
2016
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Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation
by
Merkl, Rainer
, Plach, Maximilian G.
, Sterner, Reinhard
, Reisinger, Bernd
in
Actinobacteria - enzymology
/ Amino Acid Sequence
/ Biology and Life Sciences
/ Biosynthesis
/ Catalysis
/ Catalytic Domain - genetics
/ Cloning
/ Computer and Information Sciences
/ Enzymes
/ Evolution, Molecular
/ Gene expression
/ Genes
/ Genetic aspects
/ Genomes
/ Histidine - biosynthesis
/ Histidine - genetics
/ Isomerases - chemistry
/ Isomerases - genetics
/ Metabolism
/ Microbial colonies
/ Observations
/ Phylogenetics
/ Protein Structure, Secondary
/ Proteobacteria - enzymology
/ Research and Analysis Methods
/ Substrate Specificity
/ Trees
/ Tryptophan - biosynthesis
2016
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Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation
by
Merkl, Rainer
, Plach, Maximilian G.
, Sterner, Reinhard
, Reisinger, Bernd
in
Actinobacteria - enzymology
/ Amino Acid Sequence
/ Biology and Life Sciences
/ Biosynthesis
/ Catalysis
/ Catalytic Domain - genetics
/ Cloning
/ Computer and Information Sciences
/ Enzymes
/ Evolution, Molecular
/ Gene expression
/ Genes
/ Genetic aspects
/ Genomes
/ Histidine - biosynthesis
/ Histidine - genetics
/ Isomerases - chemistry
/ Isomerases - genetics
/ Metabolism
/ Microbial colonies
/ Observations
/ Phylogenetics
/ Protein Structure, Secondary
/ Proteobacteria - enzymology
/ Research and Analysis Methods
/ Substrate Specificity
/ Trees
/ Tryptophan - biosynthesis
2016
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Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation
Journal Article
Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation
2016
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Overview
Modern enzymes are highly optimized biocatalysts that process their substrates with extreme efficiency. Many enzymes catalyze more than one reaction; however, the persistence of such ambiguities, their consequences and evolutionary causes are largely unknown. As a paradigmatic case, we study the history of bi-functionality for a time span of approximately two billion years for the sugar isomerase HisA from histidine biosynthesis. To look back in time, we computationally reconstructed and experimentally characterized three HisA predecessors. We show that these ancient enzymes catalyze not only the HisA reaction but also the isomerization of a similar substrate, which is commonly processed by the isomerase TrpF in tryptophan biosynthesis. Moreover, we found that three modern-day HisA enzymes from Proteobacteria and Thermotogae also possess low TrpF activity. We conclude that this bi-functionality was conserved for at least two billion years, most likely without any evolutionary pressure. Although not actively selected for, this trait can become advantageous in the case of a gene loss. Such exaptation is exemplified by the Actinobacteria that have lost the trpF gene but possess the bi-functional HisA homolog PriA, which adopts the roles of both HisA and TrpF. Our findings demonstrate that bi-functionality can perpetuate in the absence of selection for very long time-spans.
Publisher
Public Library of Science,Public Library of Science (PLoS)
Subject
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